View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_high_5 (Length: 430)
Name: NF16571_high_5
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 50 - 336
Target Start/End: Complemental strand, 30338723 - 30338437
Alignment:
| Q |
50 |
agactgacaacaaatttgccataaaccttcaaagaatctcatttgtcatgnnnnnnnnnnnnnnnnnnnnnctagatttcattttctaacggatcaaatg |
149 |
Q |
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| T |
30338723 |
agactgacaacaaatttgccataaaccttcaaagaatctcatttgtcatgaaaaaagaaagcacataaaaactagatttcattttctaacggatcaaatg |
30338624 |
T |
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| Q |
150 |
aacaaagccaagtttgaagaaatcaacatcaatcatcttctcatctattcttgttatgtattggaaggttattatgtataactaattctctctatatagt |
249 |
Q |
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| T |
30338623 |
aacaaagccaagtttgaagaaatcaacatcaatcatcttctcatctattcttgttatgtactggaaggttattatgtataactaattctctctatatagt |
30338524 |
T |
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| Q |
250 |
tagaattatgttttgtttgctatgattttgatgtagatatttgatctgactaattatattcaacttttgtttcattatatcaatgaa |
336 |
Q |
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| T |
30338523 |
tagaattatgttttgtttgctatgatttcgatgtagatatttgatctgactaattatatacaacttttgtttcattatatcaatgaa |
30338437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 30338403 - 30338323
Alignment:
| Q |
335 |
aactaattatttgattttgaaagtgatagacataaaattttcatatgagaacatgaaattggttcatttgtagatggaatt |
415 |
Q |
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| T |
30338403 |
aactaattatttgattttgaaagtgatagacataaaattttcatatgagaacatgaaattggttcatttgtggatggaatt |
30338323 |
T |
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