View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16571_low_11 (Length: 430)

Name: NF16571_low_11
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16571_low_11
NF16571_low_11
[»] chr5 (7 HSPs)
chr5 (98-430)||(17520179-17520512)
chr5 (1-48)||(17544432-17544479)
chr5 (1-46)||(20153299-20153344)
chr5 (1-44)||(33871722-33871765)
chr5 (1-43)||(8875449-8875491)
chr5 (1-34)||(8875651-8875684)
chr5 (1-53)||(20152771-20152823)
[»] chr7 (19 HSPs)
chr7 (98-430)||(14813668-14814001)
chr7 (98-430)||(15260663-15260996)
chr7 (1-45)||(43266264-43266308)
chr7 (1-45)||(43266650-43266694)
chr7 (1-44)||(32934732-32934775)
chr7 (1-43)||(25453128-25453170)
chr7 (1-43)||(42617911-42617953)
chr7 (1-47)||(42618295-42618341)
chr7 (1-50)||(32934341-32934390)
chr7 (1-44)||(23058813-23058856)
chr7 (1-40)||(46204424-46204463)
chr7 (1-43)||(10600026-10600068)
chr7 (1-43)||(22081560-22081602)
chr7 (1-43)||(32068480-32068522)
chr7 (1-46)||(22828204-22828248)
chr7 (1-53)||(28890568-28890621)
chr7 (11-44)||(33828188-33828221)
chr7 (1-45)||(32680593-32680637)
chr7 (1-45)||(33828358-33828402)
[»] scaffold0328 (1 HSPs)
scaffold0328 (1-52)||(11524-11575)
[»] chr6 (11 HSPs)
chr6 (1-45)||(21836414-21836458)
chr6 (1-44)||(22503158-22503201)
chr6 (1-43)||(31406878-31406920)
chr6 (1-48)||(6517498-6517545)
chr6 (1-42)||(7905244-7905285)
chr6 (1-45)||(7160802-7160846)
chr6 (1-45)||(10781145-10781189)
chr6 (1-45)||(22502772-22502816)
chr6 (1-46)||(32593487-32593532)
chr6 (1-45)||(7161188-7161232)
chr6 (1-45)||(15913932-15913976)
[»] chr1 (23 HSPs)
chr1 (1-56)||(40714827-40714882)
chr1 (1-44)||(45749841-45749884)
chr1 (1-46)||(45750226-45750271)
chr1 (1-45)||(37929416-37929460)
chr1 (1-45)||(40714442-40714486)
chr1 (1-45)||(49955731-49955775)
chr1 (1-44)||(8898516-8898559)
chr1 (1-44)||(25885377-25885420)
chr1 (1-43)||(17188954-17188996)
chr1 (1-43)||(30326496-30326538)
chr1 (1-45)||(28325187-28325231)
chr1 (1-45)||(31050948-31050992)
chr1 (1-44)||(8898901-8898944)
chr1 (1-44)||(20760889-20760932)
chr1 (1-44)||(28324804-28324847)
chr1 (1-43)||(17189235-17189277)
chr1 (1-43)||(49955347-49955389)
chr1 (1-50)||(19515812-19515861)
chr1 (1-46)||(24905164-24905209)
chr1 (1-46)||(35038452-35038497)
chr1 (1-54)||(36694271-36694324)
chr1 (1-54)||(36710372-36710425)
chr1 (1-41)||(44523522-44523562)
[»] chr8 (19 HSPs)
chr8 (1-47)||(7983424-7983470)
chr8 (1-53)||(234124-234176)
chr8 (1-53)||(710535-710587)
chr8 (1-53)||(747747-747799)
chr8 (1-53)||(871642-871694)
chr8 (1-40)||(37542609-37542648)
chr8 (1-43)||(6472399-6472441)
chr8 (1-43)||(44664508-44664550)
chr8 (1-45)||(6471688-6471732)
chr8 (1-41)||(8998073-8998113)
chr8 (1-45)||(35634483-35634527)
chr8 (1-41)||(44664892-44664932)
chr8 (1-40)||(8997859-8997898)
chr8 (1-43)||(15229931-15229973)
chr8 (1-43)||(25124947-25124989)
chr8 (1-45)||(10445719-10445763)
chr8 (1-45)||(11675049-11675093)
chr8 (1-45)||(23505050-23505094)
chr8 (1-45)||(23507811-23507855)
[»] chr4 (19 HSPs)
chr4 (1-54)||(39701293-39701346)
chr4 (1-44)||(3032581-3032624)
chr4 (1-44)||(27069294-27069337)
chr4 (1-44)||(27149379-27149422)
chr4 (1-44)||(52573612-52573655)
chr4 (1-44)||(54858559-54858602)
chr4 (1-44)||(54858944-54858987)
chr4 (1-47)||(16605598-16605644)
chr4 (1-46)||(50504209-50504254)
chr4 (1-53)||(41583617-41583669)
chr4 (1-41)||(45463075-45463115)
chr4 (1-45)||(52573226-52573270)
chr4 (1-40)||(11523952-11523991)
chr4 (1-43)||(10407889-10407931)
chr4 (1-43)||(10408273-10408315)
chr4 (1-53)||(22567141-22567193)
chr4 (1-45)||(27068908-27068952)
chr4 (1-45)||(50751883-50751927)
chr4 (1-45)||(51859790-51859834)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-45)||(222173-222217)
[»] chr3 (22 HSPs)
chr3 (1-49)||(37778657-37778705)
chr3 (1-44)||(32306423-32306466)
chr3 (1-44)||(40788804-40788847)
chr3 (1-43)||(10294567-10294609)
chr3 (1-43)||(13949079-13949121)
chr3 (1-47)||(33156380-33156426)
chr3 (1-45)||(3469584-3469628)
chr3 (1-45)||(13948778-13948822)
chr3 (1-41)||(33506180-33506220)
chr3 (1-44)||(3469199-3469242)
chr3 (1-44)||(29118922-29118965)
chr3 (1-40)||(32306808-32306847)
chr3 (1-44)||(52032523-52032566)
chr3 (3-41)||(29686326-29686364)
chr3 (1-45)||(4322590-4322634)
chr3 (1-41)||(11910701-11910741)
chr3 (1-41)||(29118529-29118569)
chr3 (1-41)||(29685943-29685983)
chr3 (1-45)||(36314296-36314340)
chr3 (1-45)||(40758496-40758540)
chr3 (1-45)||(41421970-41422014)
chr3 (1-45)||(52032136-52032180)
[»] chr2 (9 HSPs)
chr2 (1-44)||(8710852-8710895)
chr2 (1-47)||(6573539-6573585)
chr2 (1-43)||(28226128-28226170)
chr2 (1-42)||(41588442-41588483)
chr2 (1-44)||(15604338-15604381)
chr2 (1-47)||(6573043-6573089)
chr2 (1-46)||(8342184-8342229)
chr2 (1-42)||(11830365-11830406)
chr2 (1-53)||(41248914-41248966)
[»] scaffold0771 (2 HSPs)
scaffold0771 (1-43)||(1219-1261)
scaffold0771 (1-45)||(918-962)
[»] scaffold0388 (1 HSPs)
scaffold0388 (1-45)||(12623-12667)
[»] scaffold0599 (1 HSPs)
scaffold0599 (1-41)||(2395-2435)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 98 - 430
Target Start/End: Original strand, 17520179 - 17520512
Alignment:
Q  98 aaactaaagttgctttgtagtcctagaggtag-cacacttaaccgaagtgcctaaaccagagattgtgttcattgtcttgctatttatcatttcttgatt 196  Q
    |||||| ||||||| | ||| | || |||||| |||||||||||||||||| ||||| |   ||||||||||||||||||| |||||| ||||||| | |    
T  17520179 aaactatagttgctatataggcgtataggtagacacacttaaccgaagtgcgtaaacaaattattgtgttcattgtcttgcgatttattatttctttaat 17520278  T
Q  197 cttctgttattggtttctgttctaacagtaaatatgagatttaatatagaaaatagatgcgtagataataaggaataaattatgacatttgatgctnnnn 296  Q
    ||||||||| | ||| ||||||||| | |||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||        
T  17520279 cttctgttactagttgctgttctaaaaataaatatgagatttgatatagaaaatagatgcgtaaataatacggaataaattatgacatttgatgct-aag 17520377  T
Q  297 nnnntataaatttcctttgcaacaccacaaaaatatgcattgtaaaacctgcaatgcctacaattgcaatacat----tcgcatccacgaattaaaaccg 392  Q
        ||||||||||||||||||||||||   | |||||||||||| |||| |||||||||||||| |||||| |     |||||||||||||||||||||    
T  17520378 aaaatataaatttcctttgcaacaccac---actatgcattgtaacacctacaatgcctacaattacaatacttccgcgcgcatccacgaattaaaaccg 17520474  T
Q  393 tggaatatatgttattaatagatagtatttccaataat 430  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17520475 tggaatatatgttattaatagatagtatttccaataat 17520512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17544432 - 17544479
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctatta 48  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  17544432 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcctatta 17544479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20153299 - 20153344
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctat 46  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||    
T  20153299 ttaaatgacacctaattgcaaggacgaaacacatcattaagcctat 20153344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 33871722 - 33871765
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||    
T  33871722 ttaaatggcgcctaattgcaaggacgaaacacatcattaagcct 33871765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8875491 - 8875449
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||    
T  8875491 ttaaatgacgcttaattgcaaggacgaaacacatcattaagcc 8875449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8875651 - 8875684
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacat 34  Q
    |||||||||||||||||||||||| |||||||||    
T  8875651 ttaaatgacgcctaattgcaaggacgaaacacat 8875684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20152823 - 20152771
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatat 53  Q
    ||||||||||| |||||||| ||| ||||||||| |||||||| | |||||||    
T  20152823 ttaaatgacgcttaattgcatggacgaaacacatcattaagccaaatatatat 20152771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 98 - 430
Target Start/End: Complemental strand, 14814001 - 14813668
Alignment:
Q  98 aaactaaagttgctttgtagtcctagaggtag-cacacttaaccgaagtgcctaaaccagagattgtgttcattgtcttgctatttatcatttcttgatt 196  Q
    |||||| |||||||  |||||| || |||||| ||||||||| |||||||| ||||| |  |||||||||||||||||||| |||||| ||||||| | |    
T  14814001 aaactatagttgctacgtagtcgtataggtagacacacttaatcgaagtgcgtaaacaaatgattgtgttcattgtcttgcgatttattatttctttaat 14813902  T
Q  197 cttctgttattggtttctgttctaacagtaaatatgagatttaatatagaaaatagatgcgtagataataaggaataaattatgacatttgatgctnnnn 296  Q
    ||||||||| | ||| | ||||||| | |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| |||||        
T  14813901 cttctgttactagttgccgttctaaaaataaatatgagatttgatatagaaaatagatgcgtaaataatacggaataaattatgacattttatgct-aaa 14813803  T
Q  297 nnnntataaatttcctttgcaacaccacaaaaatatgcattgtaaaacctgcaatgcctacaattgcaatacat----tcgcatccacgaattaaaaccg 392  Q
        ||||||||||||||||||||||||   | |||||||||||| |||| |||||||||||||| |||||| |     |||||||||||||||||||||    
T  14813802 aaaatataaatttcctttgcaacaccac---actatgcattgtaacacctacaatgcctacaattacaatacttccgcgcgcatccacgaattaaaaccg 14813706  T
Q  393 tggaatatatgttattaatagatagtatttccaataat 430  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  14813705 tggaatatatgttattaatcgatagtatttccaataat 14813668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 98 - 430
Target Start/End: Complemental strand, 15260996 - 15260663
Alignment:
Q  98 aaactaaagttgctttgtagtcctagaggtag-cacacttaaccgaagtgcctaaaccagagattgtgttcattgtcttgctatttatcatttcttgatt 196  Q
    |||||| |||||||  |||||| || |||||| ||||||||| |||||||| ||||| |  |||||||||||||||||||| |||||| ||||||| | |    
T  15260996 aaactatagttgctacgtagtcgtataggtagacacacttaatcgaagtgcgtaaacaaatgattgtgttcattgtcttgcgatttattatttctttaat 15260897  T
Q  197 cttctgttattggtttctgttctaacagtaaatatgagatttaatatagaaaatagatgcgtagataataaggaataaattatgacatttgatgctnnnn 296  Q
    ||||||||| | ||| | ||||||| | |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| |||||        
T  15260896 cttctgttactagttgccgttctaaaaataaatatgagatttgatatagaaaatagatgcgtaaataatacggaataaattatgacattttatgct-aaa 15260798  T
Q  297 nnnntataaatttcctttgcaacaccacaaaaatatgcattgtaaaacctgcaatgcctacaattgcaatacat----tcgcatccacgaattaaaaccg 392  Q
        ||||||||||||||||||||||||   | |||||||||||| |||| |||||||||||||| |||||| |     |||||||||||||||||||||    
T  15260797 aaaatataaatttcctttgcaacaccac---actatgcattgtaacacctacaatgcctacaattacaatacttccgcgcgcatccacgaattaaaaccg 15260701  T
Q  393 tggaatatatgttattaatagatagtatttccaataat 430  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  15260700 tggaatatatgttattaatcgatagtatttccaataat 15260663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43266308 - 43266264
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  43266308 ttaaatgacgcctaattgcaaggacgaaacacatcattaagccta 43266264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43266650 - 43266694
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  43266650 ttaaatgacgcctaattgcaaggacgaaacacatcattaagccta 43266694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32934732 - 32934775
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  32934732 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 32934775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25453170 - 25453128
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  25453170 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcc 25453128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42617953 - 42617911
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  42617953 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcc 42617911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42618295 - 42618341
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctatt 47  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  42618295 ttaaatgacgcctaattgcaaggacgaaacacatcattaaacctatt 42618341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32934390 - 32934341
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattata 50  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||| |||||    
T  32934390 ttaaatgacacctaattgcaaggatgaaacacatcattaaaccttttata 32934341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23058813 - 23058856
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||| ||||||||||| ||||||||| |||||||||    
T  23058813 ttaaatgacgccgaattgcaaggacgaaacacatcattaagcct 23058856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46204463 - 46204424
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaa 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  46204463 ttaaatgacgcctaattgcaaggacgaaacacatcattaa 46204424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10600068 - 10600026
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||    
T  10600068 ttaaatgacgcctaattgcaaggacgaaacacatcatttagcc 10600026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22081602 - 22081560
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||    
T  22081602 ttaaatgacgcataattgcaaggacgaaacacatcattaagcc 22081560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 32068480 - 32068522
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||    
T  32068480 ttaaatgactcctaattgcaaggacgaaacacatcattaagcc 32068522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22828204 - 22828248
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctat 46  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  22828204 ttaaatgacccctaattacaaggatgaaacacatt-ttaagcctat 22828248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28890621 - 28890568
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc-tattatatat 53  Q
    |||||||||| ||||||||||||| ||||||||| ||||| || ||||||||||    
T  28890621 ttaaatgacgtctaattgcaaggacgaaacacatcattaaaccttattatatat 28890568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 33828221 - 33828188
Alignment:
Q  11 cctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||| |||||||||||||||||||    
T  33828221 cctaattgcaaggacgaaacacattattaagcct 33828188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32680637 - 32680593
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||||||||||||||||||  || ||||| ||||||||||    
T  32680637 ttaaatgacgcctaattgcaaggactaatcacatcattaagccta 32680593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33828358 - 33828402
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||| |||||||||||||| ||||| ||| ||||||||||    
T  33828358 ttaaatgacacctaattgcaaggacgaaactcatcattaagccta 33828402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11524 - 11575
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatata 52  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  11524 ttaaatgacgcctaattgcaaggatgaaacacatcattaagcctataatata 11575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21836414 - 21836458
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  21836414 ttaaatgacgcctaattgcaaggatgaaacacatcattaagccta 21836458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22503158 - 22503201
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  22503158 ttaaatgacgcctaattgcaaggacgaaacacattattaagcct 22503201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31406920 - 31406878
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  31406920 ttaaatgacgcctaattgcaaggacgaaacacattattaagcc 31406878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6517545 - 6517498
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctatta 48  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  6517545 ttaaatgacgcctaattgcaaggacgaaacacatcattaagccaatta 6517498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7905285 - 7905244
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagc 42  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  7905285 ttaaatgacgcctaattgcaaggacgaaacacatcattaagc 7905244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7160846 - 7160802
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||    
T  7160846 ttaaatgacgcctaattgcaaggacgaaacacatcattaaaccta 7160802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10781189 - 10781145
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||    
T  10781189 ttaaatgacgcctaattgtaaggacgaaacacatcattaagccta 10781145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22502816 - 22502772
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||    
T  22502816 ttaaatgacgcctaattgcaaggacgaaacacatcattaaaccta 22502772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32593532 - 32593487
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctat 46  Q
    |||||||||||||||||| |||||  |||||||| |||||||||||    
T  32593532 ttaaatgacgcctaattgaaaggactaaacacatcattaagcctat 32593487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7161188 - 7161232
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| |||| | || ||||||||||    
T  7161188 ttaaatgacgcctaattgcaaggacgaaatatatcattaagccta 7161232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15913932 - 15913976
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||| | |||||||||||| ||||||||| ||||||||||    
T  15913932 ttaaatgacccttaattgcaaggacgaaacacatcattaagccta 15913976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 40714827 - 40714882
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatatata 56  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| ||| ||||||    
T  40714827 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcctagtatttatata 40714882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45749884 - 45749841
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  45749884 ttaaatgacgcctaattgcaaggatgaaacacatcattaagcct 45749841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45750226 - 45750271
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctat 46  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||    
T  45750226 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcctat 45750271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37929460 - 37929416
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  37929460 ttaaatgacgcctaattgcaaggacgaaacacatcattaagccta 37929416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40714486 - 40714442
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  40714486 ttaaatgacgcctaattgcaaggacgaaacacatcattaagccta 40714442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49955731 - 49955775
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  49955731 ttaaatgacgcctaattgcaaggacgaaacacatcattaagccta 49955775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8898559 - 8898516
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  8898559 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 8898516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25885377 - 25885420
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  25885377 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 25885420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17188996 - 17188954
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  17188996 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcc 17188954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30326538 - 30326496
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  30326538 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcc 30326496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28325187 - 28325231
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||    
T  28325187 ttaaatgacgcctaattgcaaggccgaaacacatcattaagccta 28325231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 31050992 - 31050948
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||||    
T  31050992 ttaaataacgcctaattgcaaggacgaaacacatcattaagccta 31050948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8898901 - 8898944
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||    
T  8898901 ttaaatgacgcctaattacaaggacgaaacacatcattaagcct 8898944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 20760889 - 20760932
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||    
T  20760889 ttaaatgacgcctaattgtaaggacgaaacacatcattaagcct 20760932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28324847 - 28324804
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||    
T  28324847 ttaaacgacgcctaattgcaaggaggaaacacatcattaagcct 28324804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17189235 - 17189277
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||    
T  17189235 ttaaatgacgtctaattgcaaggacgaaacacatcattaagcc 17189277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 49955389 - 49955347
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||    
T  49955389 ttaaatgatgcctaattgcaaggacgaaacacatcattaagcc 49955347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19515861 - 19515812
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattata 50  Q
    ||||| ||| ||||||||||||||||||| ||||  ||||||||||||||    
T  19515861 ttaaacgacccctaattgcaaggatgaaatacatatttaagcctattata 19515812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24905209 - 24905164
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctat 46  Q
    ||||||||||||||||||||||||  || ||||| |||||||||||    
T  24905209 ttaaatgacgcctaattgcaaggactaatcacatcattaagcctat 24905164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35038497 - 35038452
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctat 46  Q
    ||||||||| | |||||||||||| ||||||||||||||| |||||    
T  35038497 ttaaatgacccttaattgcaaggacgaaacacattattaaacctat 35038452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36694324 - 36694271
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatata 54  Q
    ||||| ||| ||||||||||||||||||| ||||  ||||||||||| ||||||    
T  36694324 ttaaacgacccctaattgcaaggatgaaatacatatttaagcctattttatata 36694271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36710425 - 36710372
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatata 54  Q
    ||||| ||| ||||||||||||||||||| ||||  ||||||||||| ||||||    
T  36710425 ttaaacgacccctaattgcaaggatgaaatacatatttaagcctattttatata 36710372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44523522 - 44523562
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaag 41  Q
    |||||||| ||||||||||||||| ||||||||| ||||||    
T  44523522 ttaaatgaggcctaattgcaaggacgaaacacatcattaag 44523562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7983470 - 7983424
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctatt 47  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  7983470 ttaaatgacgcctaattgcaaggacgaaacacataattaagcctatt 7983424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 234124 - 234176
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatat 53  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||| |||||||    
T  234124 ttaaatgatgcctaattgcaaggacgaaacacatcattaagcctactatatat 234176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 710535 - 710587
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatat 53  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||| |||||||    
T  710535 ttaaatgatgcctaattgcaaggacgaaacacatcattaagcctactatatat 710587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 747747 - 747799
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatat 53  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||| |||||||    
T  747747 ttaaatgatgcctaattgcaaggacgaaacacatcattaagcctactatatat 747799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 871642 - 871694
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatat 53  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||| |||||||    
T  871642 ttaaatgatgcctaattgcaaggacgaaacacatcattaagcctactatatat 871694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 37542609 - 37542648
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaa 40  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  37542609 ttaaatgacgcctaattgtaaggatgaaacacattattaa 37542648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6472399 - 6472441
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  6472399 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcc 6472441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44664550 - 44664508
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  44664550 ttaaatgacgcctaattgcaaggacgaaacacataattaagcc 44664508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6471732 - 6471688
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||    
T  6471732 ttaaatgacgcctaattgcaaggacgaaacacatcattaaaccta 6471688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8998073 - 8998113
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaag 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  8998073 ttaaatgacgcctaattgcaaggacgaaacacatcattaag 8998113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35634483 - 35634527
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||||    
T  35634483 ttaaatgacgcttaattgcaaggacgaaacacatcattaagccta 35634527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44664892 - 44664932
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaag 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  44664892 ttaaatgacgcctaattgcaaggacgaaacacatcattaag 44664932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8997898 - 8997859
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaa 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  8997898 ttaaatgacgcctaattgcaaggacgaaacacatcattaa 8997859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15229973 - 15229931
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    ||||||||||||||||||||||||  |||||||| ||||||||    
T  15229973 ttaaatgacgcctaattgcaaggacaaaacacatcattaagcc 15229931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25124947 - 25124989
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||    
T  25124947 ttaaatgacacctaattgcaaggacgaaacacatgattaagcc 25124989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10445719 - 10445763
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||| |||||||||||||| ||||||||| ||||| ||||    
T  10445719 ttaaatgacacctaattgcaaggacgaaacacatcattaaaccta 10445763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11675049 - 11675093
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||||||||||||||||||  || ||||| ||||||||||    
T  11675049 ttaaatgacgcctaattgcaaggactaatcacatcattaagccta 11675093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23505094 - 23505050
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||||||||||||||||||  || ||||| ||||||||||    
T  23505094 ttaaatgacgcctaattgcaaggactaatcacatcattaagccta 23505050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23507811 - 23507855
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||||||||||||||||||  || ||||| ||||||||||    
T  23507811 ttaaatgacgcctaattgcaaggactaatcacatcattaagccta 23507855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39701293 - 39701346
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatata 54  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||    
T  39701293 ttaaatgacgcctaattgcaaggacgaaacacatcattaaacctataatatata 39701346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3032624 - 3032581
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  3032624 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 3032581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27069294 - 27069337
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  27069294 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 27069337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27149379 - 27149422
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  27149379 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 27149422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 52573612 - 52573655
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  52573612 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 52573655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 54858602 - 54858559
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  54858602 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 54858559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 54858944 - 54858987
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  54858944 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 54858987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 16605644 - 16605598
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctatt 47  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  16605644 ttaaatgacacctaattgcaaggacgaaacacatcattaagcctatt 16605598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50504209 - 50504254
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctat 46  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||    
T  50504209 ttaaatgacgcctaattacaaggacgaaacacatcattaagcctat 50504254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41583617 - 41583669
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatat 53  Q
    ||||||||| |||||||||| |||||||||||||  | |||||||||||||||    
T  41583617 ttaaatgacccctaattgcagggatgaaacacatattaaagcctattatatat 41583669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45463115 - 45463075
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaag 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  45463115 ttaaatgacgcctaattgcaaggacgaaacacatcattaag 45463075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52573270 - 52573226
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||    
T  52573270 ttaaatgacgcctaattgcaaagacgaaacacatcattaagccta 52573226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11523991 - 11523952
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaa 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  11523991 ttaaatgacgcctaattgcaaggacgaaacacatcattaa 11523952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10407931 - 10407889
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||    
T  10407931 ttaaatgactcctaattgcaaggacgaaacacatcattaagcc 10407889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10408273 - 10408315
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||  ||||||||    
T  10408273 ttaaatgacgcctaattgcaaggacgaaacacaacattaagcc 10408315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22567141 - 22567193
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatat 53  Q
    ||||||||||||||||||||||||  || ||||| ||||||||| | ||||||    
T  22567141 ttaaatgacgcctaattgcaaggactaatcacatcattaagcctttaatatat 22567193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27068952 - 27068908
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||| ||||||||||||||| |||||||||  |||||||||    
T  27068952 ttaaatgatgcctaattgcaaggacgaaacacatccttaagccta 27068908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50751883 - 50751927
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||| |||||||||||||| || |||||||||| ||||||||||    
T  50751883 ttaaacgacgcctaattgcaggggtgaaacacatcattaagccta 50751927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51859790 - 51859834
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||| ||| ||||||||||||| ||||||||| ||||||||||    
T  51859790 ttaaattacgtctaattgcaaggacgaaacacatcattaagccta 51859834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 222173 - 222217
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  222173 ttaaatgacgcctaattgcaaggacgaaacacatcattaagccta 222217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37778657 - 37778705
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattat 49  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  37778657 ttaaatgacgcctaattgcaaggacgaaacacatcattaagccttttat 37778705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32306466 - 32306423
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  32306466 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 32306423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40788804 - 40788847
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  40788804 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 40788847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10294609 - 10294567
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  10294609 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcc 10294567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13949079 - 13949121
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  13949079 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcc 13949121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 33156380 - 33156426
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctatt 47  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  33156380 ttaaatgacgcctaattgcaaggacgaaacacatcattaaacctatt 33156426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3469584 - 3469628
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| |||||| || ||||||||||    
T  3469584 ttaaatgacgcctaattgcaaggacgaaacagatcattaagccta 3469628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13948822 - 13948778
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||    
T  13948822 ttaaatgatgcctaattgcaaggacgaaacacatcattaagccta 13948778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33506220 - 33506180
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaag 41  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  33506220 ttaaatgacgcctaattgcaaggacgaaacacatcattaag 33506180  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3469242 - 3469199
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    ||||||||||||||||||||| || ||||||||| |||||||||    
T  3469242 ttaaatgacgcctaattgcaaagacgaaacacatcattaagcct 3469199  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29118922 - 29118965
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||| ||||    
T  29118922 ttaaatgacgcctaattgcaaggacgaaacacatcattatgcct 29118965  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32306808 - 32306847
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaa 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  32306808 ttaaatgacgcctaattgcaaggacgaaacacatcattaa 32306847  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 52032523 - 52032566
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||| ||||||||||||| ||||||||| |||||||||    
T  52032523 ttaaatgacgtctaattgcaaggacgaaacacatcattaagcct 52032566  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 29686326 - 29686364
Alignment:
Q  3 aaatgacgcctaattgcaaggatgaaacacattattaag 41  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  29686326 aaatgacgcctaattgcaaggacgaaacacatcattaag 29686364  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4322634 - 4322590
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||| |||||||||||||| || |||||||||| ||||||||||    
T  4322634 ttaaacgacgcctaattgcaggggtgaaacacatcattaagccta 4322590  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 11910741 - 11910701
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaag 41  Q
    |||||||||| ||||||||||||| ||||||||| ||||||    
T  11910741 ttaaatgacgtctaattgcaaggacgaaacacatcattaag 11910701  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29118569 - 29118529
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaag 41  Q
    ||||||||||| |||||||||||| ||||||||| ||||||    
T  29118569 ttaaatgacgcataattgcaaggacgaaacacatcattaag 29118529  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29685983 - 29685943
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaag 41  Q
    |||||||||||||||||||||||| |||| |||| ||||||    
T  29685983 ttaaatgacgcctaattgcaaggacgaaatacatcattaag 29685943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36314340 - 36314296
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||||||||||||||||||  || ||||| ||||||||||    
T  36314340 ttaaatgacgcctaattgcaaggactaatcacatcattaagccta 36314296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40758496 - 40758540
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||| ||||||||||||||||||| ||||  |||||||||    
T  40758496 ttaaatgacccctaattgcaaggatgaaatacatatttaagccta 40758540  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 41422014 - 41421970
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||| ||||||||||||||||||| ||||||||| ||||| ||||    
T  41422014 ttaactgacgcctaattgcaaggacgaaacacatcattaaaccta 41421970  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52032180 - 52032136
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    ||||||||||||||||||||||||  |||||||| ||||| ||||    
T  52032180 ttaaatgacgcctaattgcaaggacaaaacacatcattaaaccta 52032136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8710852 - 8710895
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  8710852 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcct 8710895  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6573585 - 6573539
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctatt 47  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||||    
T  6573585 ttaaatgacgcctaattggagggatgaaacacatcattaagcctatt 6573539  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28226128 - 28226170
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  28226128 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcc 28226170  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41588442 - 41588483
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagc 42  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  41588442 ttaaatgacgcctaattgtaaggacgaaacacattattaagc 41588483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15604381 - 15604338
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcct 44  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||    
T  15604381 ttaaatgacacctaattgcaaggacgaaacacatcattaagcct 15604338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6573089 - 6573043
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctatt 47  Q
    |||||||||||||||||||| ||| ||||||||| ||||| ||||||    
T  6573089 ttaaatgacgcctaattgcagggacgaaacacatcattaaacctatt 6573043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8342229 - 8342184
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctat 46  Q
    ||||||||||| |||||||||||| ||||||||| ||||| |||||    
T  8342229 ttaaatgacgcttaattgcaaggacgaaacacatcattaaacctat 8342184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11830406 - 11830365
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagc 42  Q
    |||||||||| ||||||||||||| ||||||||| |||||||    
T  11830406 ttaaatgacgtctaattgcaaggacgaaacacatcattaagc 11830365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41248914 - 41248966
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcctattatatat 53  Q
    ||||||| ||||||||||||||| | |||||||| | |||||||||| |||||    
T  41248914 ttaaatgccgcctaattgcaagggttaaacacatcaataagcctattttatat 41248966  T

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Target: scaffold0771 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1219 - 1261
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagcc 43  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  1219 ttaaatgacgcctaattgcaaggacgaaacacatcattaagcc 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 962 - 918
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||    
T  962 ttaaatgatgcctaattgcaaggacgaaacacatcattaagccta 918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12623 - 12667
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaagccta 45  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||    
T  12623 ttaaatgacgcctaattgcaaggacgaaacacatcattaaaccta 12667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2435 - 2395
Alignment:
Q  1 ttaaatgacgcctaattgcaaggatgaaacacattattaag 41  Q
    |||||||||| ||||||||||||| ||||||||| ||||||    
T  2435 ttaaatgacgtctaattgcaaggacgaaacacatcattaag 2395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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