View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_12 (Length: 416)
Name: NF16571_low_12
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 19289400 - 19288987
Alignment:
| Q |
1 |
atttgctgataggaccaaaatccaagttataatcaacattactgaattcatgtgataacttggaaattgttccttttttgattacatagcaaatgatttt |
100 |
Q |
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| T |
19289400 |
atttgctgataggaccaaaattcaagttataatcaacattactaaattcatgtgataacttggaaattgttccttttttgattacatagcaaatgatttt |
19289301 |
T |
|
| Q |
101 |
tgtatcattaaatcaagtattttgattatgttatctgtaactaaatcagacaattatctatatagatatttattcatcaaattacttttttgatgaaaag |
200 |
Q |
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| T |
19289300 |
tgtatcattaaatcaagtattttgattatgttatctgtaactgaatcagacaattatctatatagatatttattcatcaaattacttctttgatgaaaag |
19289201 |
T |
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| Q |
201 |
cattattattcaacctaatggtgtgagaaaaaattcacgttagataaatggatgtatctggatcctgtcaacaatgcttacaaagttacacatctacttt |
300 |
Q |
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| T |
19289200 |
cattattattcaacctaatggtgtgagaaaaaattcacattagataaatggatgtatctggatcctgtcaacaatccttacaaagctacacatctacttt |
19289101 |
T |
|
| Q |
301 |
caattgatatcaaaacaagcaatactattttgtcacc------------------ttattcctaacttatgtcaaaatggaatcaataccatgtgatcac |
382 |
Q |
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| T |
19289100 |
caattgatatcaaaacacgcaatactattttgtcaccttatattcctaatttatgttattcctaacttatgtcaaaatggaatcaataccatgtgatcac |
19289001 |
T |
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| Q |
383 |
aagttgctgaataa |
396 |
Q |
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| T |
19289000 |
aagttgctgaataa |
19288987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 19289631 - 19289553
Alignment:
| Q |
16 |
caaaatccaagttataatcaacattactgaattcatgtgataacttggaaattgttccttttttgattacatagcaaat |
94 |
Q |
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|||||||||||||| ||| |||||||| | || ||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
19289631 |
caaaatccaagttaacatctacattactacaacaatatgataacttggaaattgatcctattttgattacatatcaaat |
19289553 |
T |
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