View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_14 (Length: 393)
Name: NF16571_low_14
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 14868735 - 14869113
Alignment:
| Q |
1 |
ttcatgttctgtaaccaaaattcattcattcatgcatgctctcttttgtctttgattatgcactgactagaannnnnnnnnnnnnnnnngggtaagnnnn |
100 |
Q |
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| T |
14868735 |
ttcatgttctgtaaccaaaattcattcgttcatgcatgctctcttttgtctttgattatgcactgactagaacatcatcatcatcatcagggtaagaaaa |
14868834 |
T |
|
| Q |
101 |
nnncacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaa |
200 |
Q |
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| T |
14868835 |
aaacacattttctcttcctcttatcaacctttgccttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaa |
14868934 |
T |
|
| Q |
201 |
aagctgtttttcttccttttatatcaaaaagtcacctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcac |
300 |
Q |
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| T |
14868935 |
aagctgtttttcttccttttatatcaaaaagtcacctcatttttgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcac |
14869034 |
T |
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| Q |
301 |
cacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgtt |
379 |
Q |
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| T |
14869035 |
cacaccatcaaatgcagccatttttcaaacctcaatcgaccgcgattctagccgcggtcgtcccattagaactcatgtt |
14869113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 136 - 375
Target Start/End: Complemental strand, 16909800 - 16909559
Alignment:
| Q |
136 |
ttaaaacaaaaaccagattctgatggaatcccttggagtcaaagttgaagaagaaacaatgctaaaagctgtttttcttccttttatatcaaaaa--gtc |
233 |
Q |
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| T |
16909800 |
ttaaaacaaaatctaatttctaatggaatcctttggtgtgaaagttgaagaagaaacaatgttaaaagctgtttttcttccctttatatcaaaaaaagtc |
16909701 |
T |
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| Q |
234 |
acctcattttcgtagtagacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccacaccatcaaatgcagccatttttcaaacctc |
333 |
Q |
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| T |
16909700 |
acctcattttcgtagtagacatagcaaggctttttgctatgcataatgtggatgttaccataatcaccacaccagcaaatgcagccatttttcaaacctc |
16909601 |
T |
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| Q |
334 |
aatcgaccgcgattctagccgcggtcgtcccattagaactca |
375 |
Q |
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| T |
16909600 |
catcgaccacgattcaagtcgcggtcggtccattagaactca |
16909559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 12611241 - 12611293
Alignment:
| Q |
251 |
gacatagcaaggctttttgctatgcatggtgtggatgtaaccataatcaccac |
303 |
Q |
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| T |
12611241 |
gacatggcaagactatttgctatgcatggtgtggatatcaccataatcaccac |
12611293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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