View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_15 (Length: 389)
Name: NF16571_low_15
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 9299710 - 9299351
Alignment:
| Q |
17 |
attacacctgtaaatttaatatttaaaatatccttaatagttctcagaaaaatatacgaaaatggaaatgaaatgacatgagcaaagttgtgtcacctgc |
116 |
Q |
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| T |
9299710 |
attacacctgtaaatttaatatttaaaatatccttaacagttctcagaaaaatatacgaaaatggaaatgaaatgacatgagcaaagttgtgtcacctgc |
9299611 |
T |
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| Q |
117 |
agaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagagtatg |
216 |
Q |
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| T |
9299610 |
agaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagagtatg |
9299511 |
T |
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| Q |
217 |
tttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaagatcagattcaatgattctttcgctatccgaatcag |
316 |
Q |
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| T |
9299510 |
tttgattgaatggaagatgcgggaaataaagcaacgcgatcaaacagtttgatgcagtatacaagatcagattcaatgatactatcgctatccgaataag |
9299411 |
T |
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| Q |
317 |
caacataaattggacatgatgtcatattttgtgcttcgtacacttgagagtagcttctga |
376 |
Q |
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| T |
9299410 |
caacataaattggacatgatgtcatattttgtgcttcgtacacttgattgtagcttctga |
9299351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 343
Target Start/End: Original strand, 9258096 - 9258326
Alignment:
| Q |
113 |
ctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
212 |
Q |
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| T |
9258096 |
ctgcagaggataaaataacgaatgtaatcttcttcttcgatttatgttcacatttcaagcatcctatgtcaaaatttgttcccgaccatgtcaacgagag |
9258195 |
T |
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| Q |
213 |
tatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaagatcagattcaatgattctttcgctatccgaa |
312 |
Q |
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||| ||||||| | |||||| | |||||| ||||||||| ||||||||||||||| | |||||||||| ||| |||| || ||| |
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| T |
9258196 |
acggttgtattgaatagtagatgcatcaaatgaggaaacgtgatcaaacaatttgatgcagtatactaagtcagattcaacgatattttcaaggtctgaa |
9258295 |
T |
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| Q |
313 |
tcagcaacataaattggacatgatgtcatat |
343 |
Q |
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| T |
9258296 |
tcggcgacataaattggacaagatatcatat |
9258326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 9467363 - 9467418
Alignment:
| Q |
157 |
tgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
212 |
Q |
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| T |
9467363 |
tgtttacatttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagag |
9467418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 9171020 - 9170928
Alignment:
| Q |
109 |
tcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccat |
201 |
Q |
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|||||||| |||| |||| |||||| || ||||| ||| ||| ||||| |||||||||||||||| || |||||||||||||||| ||||| |
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| T |
9171020 |
tcacctgctgaggttaaagtaatgagtgttatcctcttctttgttttgttctcacatttcaagcatcttatgtcaaaatttgttccagaccat |
9170928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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