View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_16 (Length: 374)
Name: NF16571_low_16
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 46784253 - 46784598
Alignment:
| Q |
13 |
catcaaaagattttcataccaaatatgatgggtatctctccataaggtttaggaaaaggataagtactatttattccaggatatatattgatagctccat |
112 |
Q |
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| T |
46784253 |
catcaaaagattttcataccaaatatgatgggtatctctccataaggcttaggaaaagggtaagtactatttattatagggtagatattgatagccccat |
46784352 |
T |
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| Q |
113 |
ggacagttgctctagcccaatcactatgagcatgccaccataaggtcccttcctcatctgaaaaaaccactttctgtctgaatttccctccaggttggat |
212 |
Q |
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| T |
46784353 |
gcacagttgctctagcccaatcactatgagcatgccaccataaggtcccttcctcatctgaaaaaaccactttctgtctgaatttccctccaggttggat |
46784452 |
T |
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| Q |
213 |
tggacactgagttatgtactcaggaccatctgtccatggattccttggctgcatcactccatgcctgagttatttaagaatataattagttttccataca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46784453 |
tggacactgagttatgtactcaggaccatctgtccatggattccttggctgcatcactccatgcctgagttatttaagaatataattagttttccataca |
46784552 |
T |
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| Q |
313 |
ttgtgatgtgttttgcatgtgtcattaataattgaaataacaatac |
358 |
Q |
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| T |
46784553 |
ttgtgatgtgttttgcatgtgtcattaataattgaaataacaatac |
46784598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 46792522 - 46792793
Alignment:
| Q |
8 |
gacatcatcaaaagattttcataccaaatatgatgggtatctctccataaggtttaggaaaaggataagtactatttattccaggatatatattgatagc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46792522 |
gacaacatcaaaagattttcataccaaatatgatgggtatctctccataaggtttaggaaaaggataagtactatttattccaggatatatattgatagc |
46792621 |
T |
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| Q |
108 |
tccatggacagttgctctagcccaatcactatgagcatgccaccataaggtcccttcctcatctgaaaaaaccactttctgtctgaatttccctccaggt |
207 |
Q |
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| T |
46792622 |
tccatggacagttgctctagcccaatcactatgagcatgccaccataaagtcccttcctcttctgaaaaaatcactttctgtctgaattttcctccaggt |
46792721 |
T |
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| Q |
208 |
tggattggacactgagttatgtactcaggaccatctgtccatggattccttggctgcatcactccatgcctg |
279 |
Q |
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| T |
46792722 |
ttaattggacactgagttatgtactcaggaccatctgtccatggattcctaggctgcttcactccatgcctg |
46792793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 22119494 - 22119765
Alignment:
| Q |
8 |
gacatcatcaaaagattttcataccaaatatgatgggtatctctccataaggtttaggaaaaggataagtactatttattccaggatatatattgatagc |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22119494 |
gacaacatcaaaagattttcataccaaatatgatgggtatctctccataaggtttaggaaaaggataagtactctttattccaggatatatattgatagc |
22119593 |
T |
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| Q |
108 |
tccatggacagttgctctagcccaatcactatgagcatgccaccataaggtcccttcctcatctgaaaaaaccactttctgtctgaatttccctccaggt |
207 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| |||||| |
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| T |
22119594 |
tccatggacagttgttctagcccaatcaatatgagcatgccaccataaagtcccttcctcttctgaaaaaatcactttctgtctgaatttcccaccaggt |
22119693 |
T |
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| Q |
208 |
tggattggacactgagttatgtactcaggaccatctgtccatggattccttggctgcatcactccatgcctg |
279 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||| |
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| T |
22119694 |
tggattggacactgagttatgtactaaggaccatctgcccatggattcctaagctgcttcactccatgcctg |
22119765 |
T |
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