View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16571_low_17 (Length: 356)

Name: NF16571_low_17
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16571_low_17
NF16571_low_17
[»] chr8 (3 HSPs)
chr8 (12-178)||(10679621-10679786)
chr8 (179-283)||(39312534-39312638)
chr8 (189-227)||(13476361-13476399)
[»] chr7 (3 HSPs)
chr7 (217-353)||(32635359-32635504)
chr7 (179-227)||(11033487-11033535)
chr7 (178-283)||(37125552-37125657)
[»] chr1 (6 HSPs)
chr1 (178-291)||(51285245-51285358)
chr1 (179-353)||(48494808-48494991)
chr1 (176-283)||(47508233-47508340)
chr1 (205-280)||(47189293-47189368)
chr1 (178-238)||(5733160-5733220)
chr1 (180-251)||(12307925-12307996)
[»] scaffold1342 (1 HSPs)
scaffold1342 (179-256)||(1227-1304)
[»] chr2 (4 HSPs)
chr2 (179-256)||(4009254-4009331)
chr2 (179-267)||(36620177-36620265)
chr2 (179-242)||(29522585-29522648)
chr2 (179-256)||(43326101-43326178)
[»] chr6 (2 HSPs)
chr6 (179-283)||(92308-92412)
chr6 (178-279)||(11139334-11139434)
[»] chr5 (3 HSPs)
chr5 (182-280)||(13627363-13627461)
chr5 (178-249)||(3805677-3805748)
chr5 (179-227)||(22775942-22775990)
[»] scaffold0026 (1 HSPs)
scaffold0026 (179-255)||(91558-91634)
[»] chr4 (2 HSPs)
chr4 (179-283)||(55403334-55403438)
chr4 (198-227)||(54486281-54486310)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 10679621 - 10679786
Alignment:
Q  12 aatgaatgataagatatnnnnnnntacgagagaagtagataaactgtatgattaagaaaacgaaattgagatatagacataggaagtaggataaatctgg 111  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10679621 aatgaatgataagatataaaaaaatacgagagaagtagataaactgtatgattaagaaaacgaaattgag--atagacataggaagtaggataaatctgg 10679718  T
Q  112 ac-agnnnnnnnnnnnnnacagtacttaacgattgaccgggtcacaagacaacttttattattgtacc 178  Q
    ||  |             ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10679719 actggacagatatatataacagtacttaacgattgaccgggtcaccagacaacttttattattgtacc 10679786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 39312534 - 39312638
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccatt-atttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 277  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||| |||| || |||| |||||||||||||||| ||||| ||||| || ||||||    
T  39312534 cagtggcggagccacgtgaggacatgggatggccatggccaccccattaatttgtg-gaaattaccaaaatacccttgggttaaaatgaattttacaacc 39312632  T
Q  278 atgcca 283  Q
    ||||||    
T  39312633 atgcca 39312638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 13476399 - 13476361
Alignment:
Q  189 gccacgtggggacaggggatggccatggccatcccatta 227  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  13476399 gccacgtgtggacaggggatgaccatggccatcccatta 13476361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 217 - 353
Target Start/End: Original strand, 32635359 - 32635504
Alignment:
Q  217 ccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaaccatgccaccctcact---------atgcgctcttctctct 307  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||         | |||||| ||||||     
T  32635359 ccatcccattatttatgagaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccctcacttttcctgaaacgcgctcatctctcc 32635458  T
Q  308 actctggcgacgaccacgtgagttcactcttcttctctctcgacta 353  Q
    ||||||||||||||||||  |||||||||||||||||||| |||||    
T  32635459 actctggcgacgaccacgcaagttcactcttcttctctctggacta 32635504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 11033487 - 11033535
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccatta 227  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||    
T  11033487 cagtggcggagccacgtgtggacagggaatggccatggccatcccatta 11033535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 37125552 - 37125657
Alignment:
Q  178 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 277  Q
    |||||||||||||||| ||||||||| | ||||||||||||  ||||||| || | ||||| ||| | |||||||||||  |||| | || || ||||||    
T  37125552 ccagtggcggagccacatggggacagagtatggccatggcctacccattaattctttgaaattactataatacccttgatataattttaattttacaacc 37125651  T
Q  278 atgcca 283  Q
    ||||||    
T  37125652 atgcca 37125657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 51285245 - 51285358
Alignment:
Q  178 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 277  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||| || |||| ||||||||||||||| ||||||||| ||||  ||||||    
T  51285245 ccagtggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaacc 51285344  T
Q  278 atgccaccctcact 291  Q
    ||||||||||||||    
T  51285345 atgccaccctcact 51285358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 353
Target Start/End: Complemental strand, 48494991 - 48494808
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacca 278  Q
    |||||||||| ||||||||||||||||||||||||||  | ||||||||||| ||  ||| ||||||||||||||||||||||||||||||| |||||||    
T  48494991 cagtggcggaaccacgtggggacaggggatggccatgatcgtcccattatttgtggaaaattaccaaaatacccttgagttaatatgaaatttacaacca 48494892  T
Q  279 tgccaccctcact---------atgcgctcttctctctactctggcgacgaccacgtgagttcactcttcttctctctcgacta 353  Q
    ||||||| ||| |         | || ||| ||||||||||||||||| ||||||   ||||||| |||||||||||| |||||    
T  48494891 tgccaccttcagttttcttgaaacgcactcatctctctactctggcgatgaccacccaagttcacccttcttctctctggacta 48494808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 47508233 - 47508340
Alignment:
Q  176 acccagtggcggagccacgtggggacaggggatggccatggccatcccat-tatttatgtgaaaataccaaaatacccttgagttaatatgaaattcaca 274  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||  |||| || |||| |||||||||||||||| ||||| ||||| || |||    
T  47508233 acccagtggcggagccacgtgaggacaggggatggccatggccaccccatcaatttgtg-gaaattaccaaaatacccttgggttaaaatgaattttaca 47508331  T
Q  275 accatgcca 283  Q
    |||||||||    
T  47508332 accatgcca 47508340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 47189293 - 47189368
Alignment:
Q  205 ggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaaccatg 280  Q
    ||||||||||||||  |||||||||| || |||| ||||||||||||||||||||||||||||||  |||||||||    
T  47189293 ggatggccatggcctacccattatttttgggaaattaccaaaatacccttgagttaatatgaaatatacaaccatg 47189368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 5733160 - 5733220
Alignment:
Q  178 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaa 238  Q
    |||||||||||||||| ||||||| |||||||||||| |||  ||||||||||||| ||||    
T  5733160 ccagtggcggagccacttggggactggggatggccatagcctacccattatttatgagaaa 5733220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 12307996 - 12307925
Alignment:
Q  180 agtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacc 251  Q
    |||||||||||| | ||||||||||| ||||||||||||  ||||||| || ||||||| ||| | ||||||    
T  12307996 agtggcggagccgcatggggacagggtatggccatggcctacccattagttctgtgaaattactataatacc 12307925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1342 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 1227 - 1304
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttga 256  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||||| ||| |  ||||||||||    
T  1227 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattatacccttga 1304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 4009254 - 4009331
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttga 256  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||||| ||| |  ||||||||||    
T  4009254 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattatacccttga 4009331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 36620265 - 36620177
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaa 267  Q
    |||||||||||||||||| |||| ||| ||||| ||| ||  ||||||| || ||||||| ||||| ||||||||| || |||| ||||    
T  36620265 cagtggcggagccacgtgaggactgggtatggcgatgtcctgcccattaattttgtgaaattaccataatacccttaagctaatttgaa 36620177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 29522648 - 29522585
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaatac 242  Q
    |||||||||||||||||| |||| ||| ||||||||||||  ||||||  || |||||||||||    
T  29522648 cagtggcggagccacgtgtggactgggtatggccatggcctacccatttattttgtgaaaatac 29522585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 43326101 - 43326178
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttga 256  Q
    ||||||||||||||| || |||||||| || | |||||||  ||||||| || ||||||| ||| | |||||||||||    
T  43326101 cagtggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttga 43326178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 92308 - 92412
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacca 278  Q
    ||||||||||||||| ||||||||||| ||||||||||||  ||||||| || ||||||| ||| | |||||| ||||  |||| | || || |||||||    
T  92308 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaacca 92407  T
Q  279 tgcca 283  Q
    |||||    
T  92408 tgcca 92412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 11139334 - 11139434
Alignment:
Q  178 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 277  Q
    ||||||||||| |||| || |||| ||||||||||||||||  ||||||||||    |||| || ||||||||||||  ||||| |||||||| ||||||    
T  11139334 ccagtggcgga-ccacttgaggactggggatggccatggcctccccattattttatagaaattatcaaaatacccttaggttaaaatgaaatttacaacc 11139432  T
Q  278 at 279  Q
    ||    
T  11139433 at 11139434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 280
Target Start/End: Complemental strand, 13627461 - 13627363
Alignment:
Q  182 tggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaa-taccaaaatacccttgagttaatatgaaattcacaaccatg 280  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||| || ||| |||| ||||||||||| ||||  |||| ||||| || |||||||||    
T  13627461 tggcagagccacgtgaggacaggggatggccatggccaccccattaatt-tgtaaaaattaccaaaatactcttggattaaaatgaattttacaaccatg 13627363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 3805748 - 3805677
Alignment:
Q  178 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaata 249  Q
    |||||||| |||||||||| |||| ||| ||||||||||||  ||||||| || || |||||||||| ||||    
T  3805748 ccagtggcagagccacgtgaggactgggtatggccatggcctacccattaattctgggaaaataccataata 3805677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 22775942 - 22775990
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccatta 227  Q
    ||||||||||||||| |||||||||||| ||||||| |||  |||||||    
T  22775942 cagtggcggagccacttggggacaggggctggccatagcctacccatta 22775990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 91558 - 91634
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttg 255  Q
    |||||| ||||||||||| |||||||| ||||||||||||  |||| ||||| ||||||| || || ||||||||||    
T  91558 cagtggtggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttg 91634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 55403334 - 55403438
Alignment:
Q  179 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacca 278  Q
    ||||||||||||||| ||||||||| | |||| |||||||  ||||||| || ||||||| ||| | |||||||||||  |||| | || || |||||||    
T  55403334 cagtggcggagccacatggggacagagtatggtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 55403433  T
Q  279 tgcca 283  Q
    |||||    
T  55403434 tgcca 55403438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 54486281 - 54486310
Alignment:
Q  198 ggacaggggatggccatggccatcccatta 227  Q
    ||||||||||||||||||||||||||||||    
T  54486281 ggacaggggatggccatggccatcccatta 54486310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University