View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_18 (Length: 350)
Name: NF16571_low_18
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_18 |
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| [»] scaffold1185 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 22 - 339
Target Start/End: Original strand, 17738455 - 17738772
Alignment:
| Q |
22 |
ccacgttacatcccctcctcccaacctaacctacacttctcctccaccgaacgctccttatctatcgccaaatcaaagagacggggaaatttgagactca |
121 |
Q |
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| T |
17738455 |
ccacgttccatcccctcctcccaacctaacctacacttctcctccaccgaacgctccttacctaccgccaaatcaaagagacagggaaatttgagactca |
17738554 |
T |
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| Q |
122 |
acgggatatcccccaccgaggtgtcatgccaaaataaagagtcttgtccgtcacctaatacccgctgaatattgttatcaaaccatctacctgcaccctc |
221 |
Q |
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| T |
17738555 |
acgggatatcctccaccgaggtgtcaagccaaaataaagagtctcgtccgtcacctaatacccgctgaatattgttatcaaaccatctacctgcacccac |
17738654 |
T |
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| Q |
222 |
tccgaccccctcacgaaccctactcaacatccgccaccaagatgaactatgactaccaccctttgccaaccgaccccctacctccccgtaccgagcccta |
321 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17738655 |
tccgaccccctcacgaacgttactcaacatccgccaccaagatgaactatgactaccaccctttgccaaccgaccccttacctccccgtaccgagcccta |
17738754 |
T |
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| Q |
322 |
aaaaattgataccacaac |
339 |
Q |
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| T |
17738755 |
aaaaatcgataccacaac |
17738772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 33 - 283
Target Start/End: Original strand, 5663554 - 5663804
Alignment:
| Q |
33 |
cccctcctcccaacctaacctacacttctcctccaccgaacgctccttatctatcgccaaatcaaagagacggggaaatttgagactcaacgggatatcc |
132 |
Q |
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| T |
5663554 |
cccctccgcccaccctagcctacacatctctgccaccgaacactccttatccactgccaaatcaaaaagacagggaaatttatgactcaacggaatatcc |
5663653 |
T |
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| Q |
133 |
cccaccgaggtgtcatgccaaaataaagagtcttgtccgtcacctaatacccgctgaatattgttatcaaaccatctacctgcaccctctccgaccccct |
232 |
Q |
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| T |
5663654 |
cccacctaggcatcatgccaaaataaagtgtctcgaccatcgcctaaaacccactttatgttattgtcgaaccacctaccaacaccctcaccaacccctt |
5663753 |
T |
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| Q |
233 |
cacgaaccctactcaacatccgccaccaagatgaactatgactaccaccct |
283 |
Q |
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| T |
5663754 |
cgcggaccctactcaacatccgccaccatgtcgaactatgtctaccaccct |
5663804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1185 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1185
Description:
Target: scaffold1185; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 1486 - 1368
Alignment:
| Q |
41 |
cccaacctaacctacacttctcctccaccgaacgctccttatctatcgccaaatcaaagagacggggaaatttgagactcaacgggatatcccccaccga |
140 |
Q |
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|||| |||||||| ||| |||||||||||||| |||||||| | ||||||||||| || | || |||||| ||||||||||| || || || | | | |
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| T |
1486 |
cccaccctaacctccacaactcctccaccgaacactccttattcacagccaaatcaaaaagtcaggaaaatttaagactcaacggaatttctcctatcca |
1387 |
T |
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| Q |
141 |
ggtgtcatgccaaaataaa |
159 |
Q |
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| T |
1386 |
attgtcatgccaaaataaa |
1368 |
T |
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