View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_19 (Length: 335)
Name: NF16571_low_19
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 63 - 318
Target Start/End: Original strand, 31428152 - 31428407
Alignment:
| Q |
63 |
acaggtggtggtggagatgttggaagtattatttcatcatctttgtttgatcaaatgcttaaatatcgaaatgatcaacgttgtgctggtcatggatttt |
162 |
Q |
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| T |
31428152 |
acaggtggtggtggagatgttggaagtattattccatcatctttgtttgatcaaatgcttaaatatcgaaatgatcaacgttgtgctggtcatggatttt |
31428251 |
T |
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| Q |
163 |
atacctacgatggtttcattgctgcggctagatcttttaatggatttggtactaccggtgatgatgccacccgtaagaaggaacttgctgcttttttggc |
262 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31428252 |
atacctacgatggtttcatcgctgcagctagatcttttaatggatttggtaccactggtgatgatgccacccgtaagaaggaacttgctgcttttttggc |
31428351 |
T |
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| Q |
263 |
tcaaacttctcatgaaaccacaggtttattccttattctatttttgtatttagata |
318 |
Q |
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||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||| |
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| T |
31428352 |
tcaaacttctcatgaaaccaccggtatatttgttattctattttcgtatttagata |
31428407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 66 - 283
Target Start/End: Original strand, 31433131 - 31433348
Alignment:
| Q |
66 |
ggtggtggtggagatgttggaagtattatttcatcatctttgtttgatcaaatgcttaaatatcgaaatgatcaacgttgtgctggtcatggattttata |
165 |
Q |
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| T |
31433131 |
ggtggtggtggagatgttggaaggcttgtgccttcttttctgtttgatcaaatgcttaaatatcgaaatgatgcacgatgccctgggcatggattttata |
31433230 |
T |
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| Q |
166 |
cctacgatggtttcattgctgcggctagatcttttaatggatttggtactaccggtgatgatgccacccgtaagaaggaacttgctgcttttttggctca |
265 |
Q |
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| T |
31433231 |
cctacgatggtttcattgccgcgactagatcttttaatggatttggtactactggtgatgataccacccgtaagagggagctcgctgctttcttggctca |
31433330 |
T |
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| Q |
266 |
aacttctcatgaaaccac |
283 |
Q |
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|||||||||||||||||| |
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| T |
31433331 |
aacttctcatgaaaccac |
31433348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 70 - 298
Target Start/End: Original strand, 31444033 - 31444261
Alignment:
| Q |
70 |
gtggtggagatgttggaagtattatttcatcatctttgtttgatcaaatgcttaaatatcgaaatgatcaacgttgtgctggtcatggattttataccta |
169 |
Q |
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||||||| |||||||||||| ||||||| || || |||||||| |||||||||||||||||||||||| ||| ||||||| | |||||||||| |||| |
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| T |
31444033 |
gtggtggtgatgttggaagtcttatttcttcttcgatgtttgatgaaatgcttaaatatcgaaatgatccacggtgtgctgcacgtggattttattccta |
31444132 |
T |
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| Q |
170 |
cgatggtttcattgctgcggctagatcttttaatggatttggtactaccggtgatgatgccacccgtaagaaggaacttgctgcttttttggctcaaact |
269 |
Q |
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|||| ||||||| |||| |||||||||||||| |||||||||||||| |||||||| |||||||||| ||| |||||||||| || | ||||||| |
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| T |
31444133 |
cgatagtttcataactgctgctagatcttttaacggatttggtactactggtgatgaaaacacccgtaagcgcgaagttgctgctttcttaggtcaaact |
31444232 |
T |
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| Q |
270 |
tctcatgaaaccacaggtttattccttat |
298 |
Q |
| |
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||||||||||| |||||| |||| ||||| |
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| T |
31444233 |
tctcatgaaactacaggtatatttcttat |
31444261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 31428080 - 31428130
Alignment:
| Q |
15 |
gatcaatattgtggagatggttgtcagagccaatgtaaatcttctccgaca |
65 |
Q |
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| T |
31428080 |
gatcaatattgtggagatggttgtcagagccaatgtaaatcttctccgaca |
31428130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 31433050 - 31433094
Alignment:
| Q |
15 |
gatcaatattgtggagatggttgtcagagccaatgtaaatcttct |
59 |
Q |
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| T |
31433050 |
gatcaatattgtggagctggttgtcagagccagtgtagatcttct |
31433094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 302
Target Start/End: Original strand, 4533736 - 4533878
Alignment:
| Q |
159 |
ttttatacctacgatggtttcattgctgcggctagatcttttaatggatttggtactaccggtgatgatgccacccgtaagaaggaacttgctgcttttt |
258 |
Q |
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|||||||| || ||||||||||||| ||| |||||||| |||||| |||| ||||||| |||||||| | || | |||| | ||||||||||||| | |
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| T |
4533736 |
ttttatacatatgatggtttcattgttgccactagatctattaatgaatttagtactacttgtgatgatactacaagaaagaggaaacttgctgctttgt |
4533835 |
T |
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| Q |
259 |
tggctcaaacttctcatgaaaccacaggtttattccttattcta |
302 |
Q |
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| T |
4533836 |
tggctcaaacttctc-tggaaacacaagtatattccttattcta |
4533878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 302
Target Start/End: Original strand, 4525444 - 4525587
Alignment:
| Q |
158 |
attttatacctacgatggtttcattgctgcggctagatcttttaatggatttggtactaccggtgatgatgccacccgtaagaaggaacttgctgctttt |
257 |
Q |
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||||||||| || ||||||||||||| ||| ||||||||| |||||||| || |||| || |||||| | | || | ||| | |||||| |||||| |
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| T |
4525444 |
attttatacatatgatggtttcattgttgctgctagatctattaatggagttagtacaacgggtgatagtactacaagaaaggggaaacttgatgctttg |
4525543 |
T |
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| Q |
258 |
ttggctcaaacttctcatgaaaccacaggtttattccttattcta |
302 |
Q |
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|||||||||||||||||||||| |||| || | |||||||||||| |
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| T |
4525544 |
ttggctcaaacttctcatgaaa-cacaagtattttccttattcta |
4525587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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