View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16571_low_2 (Length: 683)

Name: NF16571_low_2
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16571_low_2
NF16571_low_2
[»] chr6 (2 HSPs)
chr6 (10-668)||(9538560-9539217)
chr6 (222-272)||(2445291-2445341)
[»] chr5 (3 HSPs)
chr5 (222-288)||(38756722-38756788)
chr5 (241-289)||(30488936-30488984)
chr5 (232-268)||(42608888-42608924)
[»] chr7 (3 HSPs)
chr7 (223-290)||(29726793-29726860)
chr7 (233-262)||(26980965-26980994)
chr7 (233-293)||(5458069-5458129)
[»] chr8 (2 HSPs)
chr8 (236-290)||(13284266-13284320)
chr8 (233-290)||(40167325-40167382)
[»] chr2 (1 HSPs)
chr2 (232-290)||(9547410-9547468)
[»] chr1 (6 HSPs)
chr1 (222-268)||(4896633-4896679)
chr1 (233-267)||(15382843-15382877)
chr1 (234-267)||(5553025-5553058)
chr1 (233-290)||(10841903-10841960)
chr1 (233-293)||(3777721-3777781)
chr1 (223-259)||(41032924-41032960)
[»] scaffold0008 (1 HSPs)
scaffold0008 (220-269)||(119559-119608)


Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 10 - 668
Target Start/End: Complemental strand, 9539217 - 9538560
Alignment:
Q  10 aagaatatgacacttgaaatgnnnnnnntaacacaaggaaatctaaatgtgagtttctaatcttatgcatgagttnnnnnnnn-tagtatatttaaaaaa 108  Q
    ||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  9539217 aagaaaatgacacttgaaatgaaaaaaataacacaaggaaatctaaatgtgagtttctaatcttatgcatgagttaaaaaaaaatagtatatttaaaaaa 9539118  T
Q  109 tcatatttgaacttagttcataatttaaataattgaacaatgttccaacaacattgatatatcactgaaaaatttgtgtgagaagaatctgcaactataa 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  9539117 tcatatttgaacttagttcataatttaaataattcaacaatgttccaacaaaattgatatatcattgaaaaatttgtgtgagaagaatctgcaactataa 9539018  T
Q  209 gctgatgcatgtgatgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacctcggtcatcatnnnnnnn 308  Q
     |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||| |||| ||||||||||||||||||            
T  9539017 actgatgcatgtgatgtcctcgaaagcttaactcagttggtataaacaatgtatcatatttataaggtctggggttcaaacctcggtcatca--ctaaaa 9538920  T
Q  309 nntgatacatgtgatagttctccttgtagctactacgacagaatctacatatttcccttatcaaaaaa-tgattgacacatggagaggccttgttataaa 407  Q
      || |||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  9538919 aatggtacatgtgatagttctccttatagctactaccacagaatctaaatatttcccttatcaaaaaaattattgacacatggagaggccttgttataaa 9538820  T
Q  408 agaaaagaatccaaaaattaagtaaaccacacacttcaaaaaatttagtcccattatattcactcttcaactaagttcctttatcaaagcatttaaccac 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9538819 agaaaagaatccaaaaattaagtaaaccacacacttcaaaaaatttagtaccattatattcactcttcaactaagtccctttatcaaagcatttaaccac 9538720  T
Q  508 ttcttcattactctttactcaactctcatacattttttcttctaactttctctccaattctcaaacttaatttcttcacaatcatccatctctcaaatgg 607  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9538719 ttcttcatgactctttactcaactctcatatattttttcttctaacttcctctccaattctcaaacttaatttcttcacaatcatccatct-tcaaatgg 9538621  T
Q  608 atatcaaaattttcattattgcatctatcctaacctcaacattgttctttgttctttacat 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9538620 atatcaaaattttcattattgcatctatcctaacctcaacattgttctttgttctttacat 9538560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 2445291 - 2445341
Alignment:
Q  222 atgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttaca 272  Q
    ||||||||| |||||||||||||||||||||||||||| || |||| ||||    
T  2445291 atgtcctcgtaagcttaactcagttgatatgaacaatgcataatatataca 2445341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 38756722 - 38756788
Alignment:
Q  222 atgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaa 288  Q
    ||||||||| ||| ||||||||||||||||||| ||||||| |||| |||| |||| ||| ||||||    
T  38756722 atgtcctcgtaagtttaactcagttgatatgaataatgtataatatatacaaggttcggggttcaaa 38756788  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 30488936 - 30488984
Alignment:
Q  241 tcagttgatatgaacaatgtatcatatttacacggtttgggattcaaac 289  Q
    ||||||||||||||||||| || |||| |||| |||||||| |||||||    
T  30488936 tcagttgatatgaacaatgcataatatatacaaggtttggggttcaaac 30488984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 42608924 - 42608888
Alignment:
Q  232 aagcttaactcagttgatatgaacaatgtatcatatt 268  Q
    |||||||||||||||||||||||||||| || |||||    
T  42608924 aagcttaactcagttgatatgaacaatgcataatatt 42608888  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 29726793 - 29726860
Alignment:
Q  223 tgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 290  Q
    ||||||||  |||||||||||||||| ||||||||||||| |||| | || |||| ||| ||||||||    
T  29726793 tgtcctcgtgagcttaactcagttgacatgaacaatgtataatatatgcaaggttcggggttcaaacc 29726860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 26980994 - 26980965
Alignment:
Q  233 agcttaactcagttgatatgaacaatgtat 262  Q
    ||||||||||||||||||||||||||||||    
T  26980994 agcttaactcagttgatatgaacaatgtat 26980965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 5458129 - 5458069
Alignment:
Q  233 agcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacctcg 293  Q
    |||||| ||||||||||| |||||||| || |||| | || ||| ||||||||||||||||    
T  5458129 agcttagctcagttgataagaacaatgcataatatatgcaaggtctgggattcaaacctcg 5458069  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 13284320 - 13284266
Alignment:
Q  236 ttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 290  Q
    ||||||||||||||||||||||||||| |||| || | |||||| | ||||||||    
T  13284320 ttaactcagttgatatgaacaatgtataatatatataaggtttgaggttcaaacc 13284266  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 40167325 - 40167382
Alignment:
Q  233 agcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 290  Q
    ||||||||||||||| |||| |||||| || |||| |||| |||| ||||||||||||    
T  40167325 agcttaactcagttggtatggacaatgcataatatatacaaggttcgggattcaaacc 40167382  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 9547468 - 9547410
Alignment:
Q  232 aagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 290  Q
    ||||||||||||||||||||| |||||| || |||| | || |||||||| ||||||||    
T  9547468 aagcttaactcagttgatatggacaatgcataatatatgcaaggtttggggttcaaacc 9547410  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 4896633 - 4896679
Alignment:
Q  222 atgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatt 268  Q
    ||||| ||| ||||||||||||||||||||| ||||||||| |||||    
T  4896633 atgtcttcgtaagcttaactcagttgatatggacaatgtataatatt 4896679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 15382877 - 15382843
Alignment:
Q  233 agcttaactcagttgatatgaacaatgtatcatat 267  Q
    |||||||||||||||||||||||||||||| ||||    
T  15382877 agcttaactcagttgatatgaacaatgtataatat 15382843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 5553058 - 5553025
Alignment:
Q  234 gcttaactcagttgatatgaacaatgtatcatat 267  Q
    ||||||||||||||||||||||||||||| ||||    
T  5553058 gcttaactcagttgatatgaacaatgtataatat 5553025  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 10841903 - 10841960
Alignment:
Q  233 agcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 290  Q
    |||||||||||||||||||| |||||| || |||| || | |||||| ||||||||||    
T  10841903 agcttaactcagttgatatggacaatgcataatatatataaggtttgagattcaaacc 10841960  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 3777721 - 3777781
Alignment:
Q  233 agcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacctcg 293  Q
    |||||||||||||||||||| | ||||||| |||| |||| |||| | | |||||||||||    
T  3777721 agcttaactcagttgatatggataatgtataatatatacaaggttcgaggttcaaacctcg 3777781  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 41032924 - 41032960
Alignment:
Q  223 tgtcctcgaaagcttaactcagttgatatgaacaatg 259  Q
    ||||||||  |||||||||||||||||||||||||||    
T  41032924 tgtcctcgtgagcttaactcagttgatatgaacaatg 41032960  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 119559 - 119608
Alignment:
Q  220 tgatgtcctcgaaagcttaactcagttgatatgaacaatgtatcatattt 269  Q
    |||||||||||  |||||||||||||||||| | ||||||||| ||||||    
T  119559 tgatgtcctcgtgagcttaactcagttgatagggacaatgtataatattt 119608  T

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