View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_20 (Length: 326)
Name: NF16571_low_20
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 126 - 319
Target Start/End: Complemental strand, 42646182 - 42645989
Alignment:
| Q |
126 |
ggtgccatttaatttgggaaagcacannnnnnncccatcatgggaaactttgatttttacctacaactgcctgtttatcacctgctgtgatttaaatttt |
225 |
Q |
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|||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42646182 |
ggtgtcatttaatttggaaaagcacactttttttccatcatgggaaactctgatttttacctacaactgcctgtttatcacctgctgtgatttaaatttt |
42646083 |
T |
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| Q |
226 |
ttattaataaaaacatattataatgggcaaacattgagaaagtacttttctgaatcacctcactgacataaaatcgctacactctcttcatctc |
319 |
Q |
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| T |
42646082 |
ttattaataaaaacatattataatgggcaaatattgagaaagtacttttctgaatcacctcactgacataaaatcgctacactctcttcttctc |
42645989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 126 - 319
Target Start/End: Complemental strand, 49750059 - 49749867
Alignment:
| Q |
126 |
ggtgccatttaatttgggaaagcacannnnnnncccatcatgggaaactttgatttttacctacaactgcctgtttatcacctgctgtgatttaaatttt |
225 |
Q |
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|||| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
49750059 |
ggtgtcatttaatttgggaaagcacattttttttctatcatggaaaactttgatttttacctacaactgtctgtgtatcacctgctgtgatttaaatttt |
49749960 |
T |
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| Q |
226 |
ttattaataaaaacatattataatgggcaaacattgagaaagtacttttctgaatcacctcactgacataaaatcgctacactctcttcatctc |
319 |
Q |
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| T |
49749959 |
ttattaataaaaa-atattataatgggcaaatattgagaaaatacttttctgaatcacctccctgacataaaaccgctacactctcttcttctc |
49749867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 41875310 - 41875358
Alignment:
| Q |
45 |
acctttcaatctgaccaaccacatagactagtttattgaaatattgaga |
93 |
Q |
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| T |
41875310 |
acctttcaatctgaccaaccacatagactagtttattgaaatattgaga |
41875358 |
T |
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