View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_21 (Length: 321)
Name: NF16571_low_21
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 17927150 - 17927437
Alignment:
| Q |
16 |
atatatgcttaaagtccttagggaagtcaacgttcctatcttagggggcgaacttgatagtgaataacaagctctcaaagatagttgttgtagagatttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17927150 |
atatatgcttaaagtccttagggaagtcaacgttcctatcttagggggcgaacttgatagtgaatagcaagctctcaaagatagttgttgtagagatttt |
17927249 |
T |
|
| Q |
116 |
aagtgtgtcaaactatcaggcaaactttgtagatcataacaatggtctactttcaaaacctgcaaattgcaaagcctacaaagagattgtggaagagttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17927250 |
aagtgtgtcaaactatcaggcaaactttgtagatcataacaatggtctaatttcaaaacctgcaaattgcaaagcctacaaagagattgtggaagagttt |
17927349 |
T |
|
| Q |
216 |
tgaacattccatgagaaatatctaagtatcttagatattttaaacgaccaatcgaagttgacaaaatgtttagtttgttgctccgaag |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17927350 |
tgaacattccatgagaaatatctaagtatcttagatattttaaacgaccaatcgaagctgacaaaatgtttagtttgttgctccgaag |
17927437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 15453988 - 15453720
Alignment:
| Q |
21 |
tgcttaaagtccttagggaagtcaacgttcctatcttagggggcgaacttgatagtgaataacaagctctcaaagatagttgttgtagagattttaagtg |
120 |
Q |
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||||||||||| |||||||||| ||| | ||||| | ||||||| | |||| ||||| | |||| | |||| || || ||| | |||| ||||||| | |
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| T |
15453988 |
tgcttaaagtctttagggaagttaacttccctatatgagggggcaagcttgtcagtgagtcacaatcaatcaaggacagctgtcgcagagcttttaagcg |
15453889 |
T |
|
| Q |
121 |
tgtcaaactatcaggcaaactttgtagatcataacaatggtctactttcaaaacctgcaaattgcaaagcctacaaagagattgtggaagagttttgaac |
220 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| ||||| || | ||||||||||||| | |||| |||| ||||||||| | || |
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| T |
15453888 |
tgtcaaactatcaggcagcttttgtagaaaataacaatggtctagattcaagacttccaaattgcaaagcttgcaaattgattttggaagagtatcaaag |
15453789 |
T |
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| Q |
221 |
attccatgagaaatatctaagtatcttagatattttaaacgaccaatcgaagttgacaaaatgtttagt |
289 |
Q |
| |
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|| ||||||||||||||||||||||||||||| ||| ||||| ||||| |||||| |||||||| |
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| T |
15453788 |
tgacctccagaaatatctaagtatcttagatattttagacggccaattgaagtagacaaattgtttagt |
15453720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 272
Target Start/End: Original strand, 15353951 - 15354164
Alignment:
| Q |
59 |
gggggcgaacttgatagtgaataacaagctctcaaagatagttgttgtagagattttaagtgtgtcaaactatcaggcaaactttgtagatcataacaat |
158 |
Q |
| |
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|||||| | |||||||||||||| || |||||||| |||| |||||||||||||| |||||| || ||||| ||| || ||||||| || | ||||| |
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| T |
15353951 |
gggggcaagcttgatagtgaatagcagcctctcaaatatagatgttgtagagatttcaagtgtaccagactattagggaacttttgtagttcttgacaat |
15354050 |
T |
|
| Q |
159 |
ggtctactttcaaaacctgcaaattgcaaagcctacaaagagattgtggaagagttttgaacattccatgagaaatatctaagtatcttagatattttaa |
258 |
Q |
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|||| || |||| ||||||||| || | | |||| | |||| ||||||||||||||| ||||| ||||| || ||||| |||||||||||||| |
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| T |
15354051 |
aatctaactttaaaatctgcaaattccacaacgtacataaggattctggaagagttttgaaacctccataagaaagattcaagtaccttagatattttaa |
15354150 |
T |
|
| Q |
259 |
acgaccaatcgaag |
272 |
Q |
| |
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||||||||| |||| |
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| T |
15354151 |
acgaccaattgaag |
15354164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 298
Target Start/End: Original strand, 16402818 - 16403095
Alignment:
| Q |
21 |
tgcttaaagtccttagggaagtcaacgttcctatcttagggggcgaacttgatagtgaataacaagctctcaaagatagttgttgtagagattttaagtg |
120 |
Q |
| |
|
||||||||||| |||||||| ||| | |||||| | ||||||| | ||||||||||||| |||| |||| ||||| | ||||| |||| ||||||| |
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| T |
16402818 |
tgcttaaagtctttagggaattcagctttcctaaatgagggggcaagcttgatagtgaatcacaacctcttaaagacaaatgttggagagcttttaagca |
16402917 |
T |
|
| Q |
121 |
tgtcaaactatcaggcaaactttgtagatcataacaatggtctactttcaaaacctgcaaattgcaaagcctacaaagagattgtggaagagttttgaac |
220 |
Q |
| |
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||| |||| ||||||||| ||||||||| ||||||| |||| ||||| || ||||||||| ||||| | ||||| |||| |||||| | ||||| |
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| T |
16402918 |
tgttaaaccatcaggcaacttttgtagattataacaagcatctaacttcaagacttgcaaattgtaaagcttgcaaagcgattttggaaggctattgaag |
16403017 |
T |
|
| Q |
221 |
attccatgagaaatatctaagtatcttagatattttaaacgaccaatcgaagttgacaaaatgtttagtttgttgctc |
298 |
Q |
| |
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| || | |||||||||||| ||||| | |||||||| || ||||| ||||| | ||| |||||||| | |||||| |
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| T |
16403018 |
ctaccttcagaaatatctaaatatctaaaatattttagaccgccaattgaagtaggcaatttgtttagtctattgctc |
16403095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 289
Target Start/End: Original strand, 16396383 - 16396494
Alignment:
| Q |
178 |
caaattgcaaagcctacaaagagattgtggaagagttttgaacattccatgagaaatatctaagtatcttagatattttaaacgaccaatcgaagttgac |
277 |
Q |
| |
|
||||||||||||| | ||||| || | ||||||| ||||||| || | ||||||||||||||||||||||||||||| ||||||||| |||| ||| |
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| T |
16396383 |
caaattgcaaagcttgcaaagggaatttggaagatttttgaagcgaccttcagaaatatctaagtatcttagatattttagacgaccaattgaagacgac |
16396482 |
T |
|
| Q |
278 |
aaaatgtttagt |
289 |
Q |
| |
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||| |||||||| |
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| T |
16396483 |
aaattgtttagt |
16396494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 272
Target Start/End: Original strand, 15346643 - 15346828
Alignment:
| Q |
87 |
ctctcaaagatagttgttgtagagattttaagtgtgtcaaactatcaggcaaactttgtagatcataacaatggtctactttcaaaacctgcaaattgca |
186 |
Q |
| |
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|||||||| |||| ||||||||| ||| |||||| || ||||| |||||| |||| |||| | ||||| ||||| || |||| ||||||||| || |
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| T |
15346643 |
ctctcaaatatagacgttgtagagctttcaagtgtaccagactattaggcaacttttggagattttgacaatagtctagctttaaaatctgcaaattcca |
15346742 |
T |
|
| Q |
187 |
aagcctacaaagagattgtggaagagttttgaacattccatgagaaatatctaagtatcttagatattttaaacgaccaatcgaag |
272 |
Q |
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| | |||| | |||| ||||||||||||||| |||| ||||| || ||||| ||||||||||||||||||||||| |||| |
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| T |
15346743 |
caacgtacataaggattctggaagagttttgaaatttccccaagaaagattcaagtaccttagatattttaaacgaccaattgaag |
15346828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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