View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16571_low_23 (Length: 309)
Name: NF16571_low_23
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 8893147 - 8892892
Alignment:
| Q |
12 |
atgaaccgtatgaaatgttgcattgaatgcaaacattttgaactcaaattcttaatttcaaacatgcaaaatagagtatgaattttggttcatgtaattg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8893147 |
atgaaccgtatgaaatgttgcattgaatgcaaacattttgaactcaaattcttaatttcaaacatgcaaaatagagtatgaattttggttcatgtaattg |
8893048 |
T |
|
| Q |
112 |
gaaaatatgccatcgaataatttggatcattcgattatgatcaagtttaatattttgtatctaagtaggaacacgaaccgtctagttataagatccagtg |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8893047 |
gaaaatatgcaatcgaataatttggatcattcgattatgatcaaatttaatattttgtatctaagtaggaacacgaatcgtctagttataagatccagtg |
8892948 |
T |
|
| Q |
212 |
atctgaattgcatgattataattgtgtaatcttttcatttgactaagatatggaag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8892947 |
atctgaattgcatgattataattgtgtaatattttcatttgactaagatatggaag |
8892892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University