View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_24 (Length: 307)
Name: NF16571_low_24
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_24 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 33 - 299
Target Start/End: Complemental strand, 35742998 - 35742723
Alignment:
| Q |
33 |
tcaagatgatcacattgatcgaatcggtgacttaccatgcaatgccattgacggcatcctggcgcacttggacatcaaagacctagttgggactagtatt |
132 |
Q |
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| T |
35742998 |
tcaagaggatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtatt |
35742899 |
T |
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| Q |
133 |
ttgtctaaacagtggaggtataagtggactaaagcgccacgactttggtttagtgatgacttttttgaagagtacgagg---------atcttgatgatc |
223 |
Q |
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| T |
35742898 |
ttgtctaaacagtggaggtataagtggactaaagccccacgactttggtttagtgaggacttttttgaagagtacgaggatctcgaagatctcgaagatc |
35742799 |
T |
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| Q |
224 |
cagtagcttataagattatcacggatgttctcaagcaacacgaagggccgatagataagtttggtcttttcatatc |
299 |
Q |
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| T |
35742798 |
cagtaacttatagaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatc |
35742723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 297
Target Start/End: Complemental strand, 35749355 - 35749090
Alignment:
| Q |
38 |
atgatcacattgatcgaatcggtgacttaccatgcaatgccattgacggcatcctggcgcacttggacatcaaagacctagttgggactagtattttgtc |
137 |
Q |
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| T |
35749355 |
atgatcacattgatcgaatcagtgacttaccatgtaatgttattgatgatatcctagcacgcttgtacatcaaagacctagttaggactagtattttgtc |
35749256 |
T |
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| Q |
138 |
taaacagtggaggtataagtggactaaagcgccacgactttggtttagtgatgacttttttgaagagtacgaggatcttga------tgatccagtagct |
231 |
Q |
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| T |
35749255 |
aaaaaattggaggtatatgtgaacttcagccccacaactttggtttggtgaagactattttgacgagtacaaggatctcgattaccctggccctgtagct |
35749156 |
T |
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| Q |
232 |
tataagattatcacggatgttctcaagcaacacgaagggccgatagataagtttggtcttttcata |
297 |
Q |
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| T |
35749155 |
tctaaaatcatcacagatgttcttatgcaacacaacggtccgatacataagtttcatcttttcata |
35749090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 35739762 - 35739703
Alignment:
| Q |
32 |
gtcaagatgatcacattgatcgaatcggtgacttaccatgcaatgccattgacggcatcct |
92 |
Q |
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| T |
35739762 |
gtcaagatgatcacatgcatt-aatcagtgacttaccatgcaatgccattgacggcatcct |
35739703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 3734 - 3613
Alignment:
| Q |
39 |
tgatcacattgatcgaatcggtgacttaccatgcaatgccattgacggcatcctggcgcacttggacatcaaagacctagttgggactagtattttgtct |
138 |
Q |
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||||||||||||||||||| ||||||||||||| |||| |||||| |||||||| | | |||| |||| |||| |||||| | || ||| || ||||| |
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| T |
3734 |
tgatcacattgatcgaatcagtgacttaccatgtaatgtcattgatggcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctgtct |
3635 |
T |
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| Q |
139 |
aaacagtggaggtataagtgga |
160 |
Q |
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| T |
3634 |
agaaagtggaggtatatgtgga |
3613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 40011284 - 40011146
Alignment:
| Q |
39 |
tgatcacattgatcgaatcggtgacttaccatgcaatgccattgacggcatcctggcgcacttggacatcaaagacctagttgggactagtattttgtct |
138 |
Q |
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||||||||||||||||||| ||||||||||| | |||| ||| || |||||||| | |||||| || | ||||||||| |||||||| || ||||| |
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| T |
40011284 |
tgatcacattgatcgaatcagtgacttaccaagtaatgtcatcgatggcatcctagaacacttgaacgcccgagacctagtgaggactagtgttctgtct |
40011185 |
T |
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| Q |
139 |
aaacagtggaggtataagtggactaaagcgccacgactt |
177 |
Q |
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| T |
40011184 |
agaaagtggaggtatatgtggattacagtcccacgactt |
40011146 |
T |
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