View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_27 (Length: 302)
Name: NF16571_low_27
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 1029870 - 1030151
Alignment:
| Q |
1 |
agattccatctgaaagataacacacttcaatggcaatgaaacatgtctctaaagatttaaaagtatatctaacttcatataacaacctttgacataaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1029870 |
agattccatctgaaagataacacacttcaatggcaatgaaacatgtctctaaagatttacaagtatatctaacttcatataacaacctttgacataaaga |
1029969 |
T |
|
| Q |
101 |
aaaaacaaactagagttgtgttatttgaacatcaaaatacagacaccaatgtgacacaatatatgtttatctctctatctcttactttttatcttctaca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029970 |
aaaaacaaactagagttgtgttatttgaacatcaaaattcagacaccaatgtgacacaatatatgtttatctctctatctcttactttttatcttctaca |
1030069 |
T |
|
| Q |
201 |
acctatacgcattaatatacggtatacataaaaactaaaggacaacgatttgacatgaaaatataatttctcttcaaactaa |
282 |
Q |
| |
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| T |
1030070 |
acctatatgcattaatatacggtatacataaaaactaaaggacaacgatttgacatgaaaatatcatttctcttcaaactaa |
1030151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 17753698 - 17753780
Alignment:
| Q |
113 |
gagttgtgttatttgaacatcaaaatacagacacc-aatgtgacacaatatatgtttatctc--tctatctcttactttttat |
192 |
Q |
| |
|
||||||||||||||||||||||||| ||| || || ||||||||| |||||||| |||||| ||| ||||||||||||||| |
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| T |
17753698 |
gagttgtgttatttgaacatcaaaaaacatacgccgtatgtgacaccatatatgtctatctctatctctctcttactttttat |
17753780 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 32056129 - 32056202
Alignment:
| Q |
128 |
aacatcaaaatacagacacca-atgtgacacaatatatgtttatctctctatctcttactttttatcttctacaac |
202 |
Q |
| |
|
|||||||||||||| | | || |||| |||| |||||||||||||||| |||| |||||||||||||||||||| |
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| T |
32056129 |
aacatcaaaatacaaaaatcatatgtaacaccatatatgtttatctct--atcttctactttttatcttctacaac |
32056202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 20795635 - 20795554
Alignment:
| Q |
122 |
tatttgaacatcaaaatacagacaccaatgtgacacaatatatgtttatctc--tctatctcttactttttatcttctacaac |
202 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| || ||||||||| ||||| |||||| |
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| T |
20795635 |
tatttgaacatcaaaatacagacacc-gtgtgacacaatatgtgtttatctctatctctcacttacttttgatcttttacaac |
20795554 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 30475248 - 30475210
Alignment:
| Q |
164 |
tgtttatctctctatctcttactttttatcttctacaac |
202 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
30475248 |
tgtttatctctatatctcttactttttatcttttacaac |
30475210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 45971653 - 45971733
Alignment:
| Q |
119 |
tgttatttgaacatcaaaatacagacacc-aatgtgacacaatatatgtttatctctctatctcttactttttatcttcta |
198 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||||| ||||||||||||||| | |||| ||||||| |||||||| |
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| T |
45971653 |
tgttatttgaacatcaaaatacaaataccgtatgtgacatcttatatgtttatctctatctctcatacttttcatcttcta |
45971733 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 41151974 - 41152005
Alignment:
| Q |
114 |
agttgtgttatttgaacatcaaaatacagaca |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
41151974 |
agttgtgttatttgaacatcaaaatacagaca |
41152005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 9383697 - 9383731
Alignment:
| Q |
111 |
tagagttgtgttatttgaacatcaaaatacagaca |
145 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9383697 |
tagagttgtgttatttgaatatcaaaatacagaca |
9383731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 24349388 - 24349480
Alignment:
| Q |
125 |
ttgaacatcaaaatacagacaccaatgtgacacaatatatgtttatctc--tctatctcttactttttatcttctacaacctatacgcattaa |
215 |
Q |
| |
|
||||||||||||||| | ||||| || ||| || |||||||||||||| ||| ||| |||||| ||||||| |||||| ||||| |||||| |
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| T |
24349388 |
ttgaacatcaaaatataaacacctatttgatactgtatatgtttatctccatctttcttttacttattatcttatacaacttatacacattaa |
24349480 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 23211605 - 23211645
Alignment:
| Q |
162 |
tatgtttatctctctatctcttactttttatcttctacaac |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
23211605 |
tatgtttatctctaactctcttactttttatcttctacaac |
23211645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 36646864 - 36646835
Alignment:
| Q |
114 |
agttgtgttatttgaacatcaaaatacaga |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
36646864 |
agttgtgttatttgaacatcaaaatacaga |
36646835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 32663876 - 32663908
Alignment:
| Q |
114 |
agttgtgttatttgaacatcaaaatacagacac |
146 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
32663876 |
agttgtgttatttgaacatcaaaatactgacac |
32663908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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