View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_3 (Length: 648)
Name: NF16571_low_3
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 204 - 632
Target Start/End: Complemental strand, 40570296 - 40569868
Alignment:
| Q |
204 |
gtttctgtcaaaaagaatgtttatgttatgatcctaaatgtgaattggtataaatattacattatcaatggtctaaccattttgatcatgataatttaat |
303 |
Q |
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| T |
40570296 |
gtttctgtcaaaaagaatgtttatgttatgatcctaaatgtgaattggtataaatattacattatcaatggtctaaccattttgatcatgataatttaat |
40570197 |
T |
|
| Q |
304 |
aatgatatatactatatagtaacatctgggttattgacaaagtctctgtttttgctgacatagatgtgtatgataattgcatacatattatttattgatg |
403 |
Q |
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| T |
40570196 |
aatgatatatactatatagtaacatctgggttattgacaaagtctctgtttttgctgacatagatgtgtatgataattgcatacatattatttattgatg |
40570097 |
T |
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| Q |
404 |
taatgtaagtgagcttgtgaattcaaactgcagtaatgacatctagtatttacaaattatgttgtccatctccgtgaaatttacttttaattgcatttta |
503 |
Q |
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| T |
40570096 |
taatgtaagtgagcttgtgaattcaaactgcagtaatgacatctagtatttacaaattatgttgtccatctccgtgaaatttacttttaattgcatttta |
40569997 |
T |
|
| Q |
504 |
tatgttaatcgatcggtttatgtgtgctattttcacacatttattttgttcccttcttataatcttctattttatatgccaatgattcaatctaactggc |
603 |
Q |
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| T |
40569996 |
tatgttaatcgatcggtttatgtgtgctattttcacacatttattttgttcccttcttataatcttctattttatatgccaatgattcaatctaactggc |
40569897 |
T |
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| Q |
604 |
gtcataataaattggaactcactgattaa |
632 |
Q |
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| T |
40569896 |
gtcataataaattggaactcactgattaa |
40569868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 40570489 - 40570361
Alignment:
| Q |
11 |
caaagggaggttaattaaacgttatcagaggctagctggtgatagataacattgtctttcgacctataaaacttaaacagcatgcttacttgcttagaga |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40570489 |
caaaaggaggttaattaaacgttatcagaggctagctggtgatagataacattgtctttcgacctataaaacttaaacagcatgcttacttgcttagaga |
40570390 |
T |
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| Q |
111 |
cattgcaatcactaatattatttaaaact |
139 |
Q |
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| T |
40570389 |
cattgcaatcactaatattatttaaaact |
40570361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 8490178 - 8490102
Alignment:
| Q |
54 |
agataacattgtctttcgacctataaaacttaaacagcatgcttacttgcttagagacattgcaatcactaatattatttaaaact |
139 |
Q |
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||||||| ||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||| |
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| T |
8490178 |
agataactctgtctttcgacctataaaactcaaacagca--------tggttagagacattgcaatcact-atattatttaaaact |
8490102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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