View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_34 (Length: 268)
Name: NF16571_low_34
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 9463383 - 9463151
Alignment:
| Q |
19 |
tataggacccttaatcaacttctaactgaaaaaaggaacattcagttttagtgtgtatatccgtgcacataatgggagagaatttttcccttaattaaat |
118 |
Q |
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| T |
9463383 |
tataggacccttaatcaagttataactaaaaaaaggaacattcagttttagtgtgtatatccgtgcaccgaatgagagagaatttttctcttaattaaat |
9463284 |
T |
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| Q |
119 |
ttaaattaaaataccttacactttataatatgaataatataggatatacatacggttctcaaggagaaaatattatgtcaattaaaattttcagaaacaa |
218 |
Q |
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| T |
9463283 |
ttaaattaaaataccttacactttataatatgaatattataggatatacatatggttctcaaggagaaaatattttgtctattaaatttttcagaaacaa |
9463184 |
T |
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| Q |
219 |
tctcaaatatcaaaagcattatataagggaaagt |
252 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
9463183 |
tctc-aatatcaaaagcattatataagggaaagt |
9463151 |
T |
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