View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_4 (Length: 612)
Name: NF16571_low_4
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 12 - 595
Target Start/End: Complemental strand, 6191482 - 6190902
Alignment:
| Q |
12 |
aagcaaaggaaatgaaggaagaccaactgaatctgaagctggattgcatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagt |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6191482 |
aagcaaaggaaatgaaggaagaccaactgaatctgaagctggattgtatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagt |
6191383 |
T |
|
| Q |
112 |
gaaaacaactatgatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactg |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6191382 |
gaaaacaactatgatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaagga---caggttattgttcccgacaccactg |
6191286 |
T |
|
| Q |
212 |
atccaataagtaaagaaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6191285 |
atccaataagtaaagaaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctgggaag |
6191186 |
T |
|
| Q |
312 |
tccagagtctccgccaaaagcaacctgttccacaagtgatgatgttgctgtaaaagaagctttgcacaaccttgaatgcctatttgaaaattcacttgag |
411 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6191185 |
tccagagtctccgccaaaagtaacctgttccacaagtgatgatgttgctgtaaaagaagctttgcacaaccttgaatgcctatttgaaaattcactagag |
6191086 |
T |
|
| Q |
412 |
tccattctctatgacgtagagctacagcaacaattacacacgtcattggaatgcataaaactagcaaccaatgaaaaagtttctccaaacgttgtgaagc |
511 |
Q |
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| T |
6191085 |
tccattctctatgacgtagagctacaacaacaattacacacgtcattggaatgcataaaactagcaaccaatgaaaaagtttctccaaacgttgtgaagc |
6190986 |
T |
|
| Q |
512 |
ttgtccagaaaatgacatcctttattcagaacctttccaaaaactttgtcatgactaaaaatgtggttgaggatcacattaatg |
595 |
Q |
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| T |
6190985 |
ttgtccagaaaatgacatcctttattcagaacctttccaaaaactttgtcatgactaaaaatgtggttgaggatcacattaatg |
6190902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 595
Target Start/End: Complemental strand, 6184482 - 6183894
Alignment:
| Q |
19 |
ggaaatgaaggaagaccaactgaatctgaagctggattgcatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagtgaaaaca |
118 |
Q |
| |
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||||||||||||||||||| |||||||||||||| ||||||| | | | ||||| | ||||| || | |||||||||||||||||||| ||||| |
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| T |
6184482 |
ggaaatgaaggaagaccaattgaatctgaagctgcattgcatttatctccagtgtcaactgttgaa---aaaagttctgataacaagtcaagtgtaaaca |
6184386 |
T |
|
| Q |
119 |
actatgatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactgatccaat |
218 |
Q |
| |
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|||| ||| || |||||||| ||||||||||||| | |||||| ||||||||| |||||||||| ||| | |||||||| || |||| ||||| || |
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| T |
6184385 |
actacgataggccagacaattgtgatgagaccaagaatccagaagaaaaaccaaacatacaaggagaacaaatcattgttcctgaaaccaatgatctgat |
6184286 |
T |
|
| Q |
219 |
aagt---------------aaagaaaattcaccaatg---gatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatc |
300 |
Q |
| |
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|||| ||||||||| ||||||| ||||| || || |||||||| ||||||||| |||||||||||||||||||| |||||| |
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| T |
6184285 |
aagtgaaccagagcaagaaaaagaaaatgcaccaataacagatcttagcaaacatgaagatggatcagatgatgacccttttgctgaacttgatagcatc |
6184186 |
T |
|
| Q |
301 |
ctgctgggaagtccagagtctccgccaaaagcaacctgttccacaagtgatgatgttgctgtaaaagaagctttgcacaaccttgaatgcctatttgaaa |
400 |
Q |
| |
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||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||| ||||| ||||||||| ||||||| ||| |
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| T |
6184185 |
ctgttgggaagtccagagtcctcgccaaaagcaacctgttccacaagcgatg---ttgctgtaagagaagccttgcataaccttgaaagcctattaaaaa |
6184089 |
T |
|
| Q |
401 |
attcacttgagtccattctctatgacgtagagctacagcaacaattacacacgtcattggaatgcataaaactagcaaccaatgaaaaagtttctccaaa |
500 |
Q |
| |
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|||||||||||||||||||| ||| || ||||||||||| |||||||| | ||| || |||| |||||||| |||| | ||||||| |||||||| || |
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| T |
6184088 |
attcacttgagtccattctcagtgatgtcgagctacagcagcaattacatatgtcttttgaatacataaaacaagcatctcatgaaaacgtttctcctaa |
6183989 |
T |
|
| Q |
501 |
cgttgtgaagcttgtccagaaaatgacatcctttattcagaacctttccaaaaactttgtcatgactaaaaatgtggttgaggatcacattaatg |
595 |
Q |
| |
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||||||| ||||||||||||||||||||||| | || ||||||||| | || |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6183988 |
tgttgtgacgcttgtccagaaaatgacatcctctgttgagaaccttttcgaagactttgtcatgactaaaaatgtggttgatgatcacattaatg |
6183894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 515 - 595
Target Start/End: Complemental strand, 6135072 - 6134992
Alignment:
| Q |
515 |
tccagaaaatgacatcctttattcagaacctttccaaaaactttgtcatgactaaaaatgtggttgaggatcacattaatg |
595 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| | || |||||||| |||||| ||| ||||||||||||||||| |||| |
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| T |
6135072 |
tccagaaaatgacatcctatattgagaaccttttcgaagactttgtcgtgactagaaaagtggttgaggatcacatgaatg |
6134992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 595
Target Start/End: Original strand, 37454117 - 37454703
Alignment:
| Q |
12 |
aagcaaaggaaatgaaggaagaccaactgaatctgaagctggattgcatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagt |
111 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | |||| || | ||||||||||||| |||| |
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| T |
37454117 |
aagcaaaggaattgaaggaagaccaacagaatctgaagctggattgcatcttccggtaatgtcagcggtcgaagaaaatgcatctgataacaagttaagt |
37454216 |
T |
|
| Q |
112 |
gaaaacaactatgatgggaaagacaattttgat---gagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacacca |
208 |
Q |
| |
|
|||||||| |||||| || |||||||| ||||| ||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||| |
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| T |
37454217 |
gaaaacaattatgattggcaagacaatattgatgatgagaccaagcaatcaaaaggaaaagcaaatatacaaggaggacaagttattgttcctgacacca |
37454316 |
T |
|
| Q |
209 |
ctgatccaataagtaaagaaaattcaccaatggatctaagaaactttgaagatgaatcagatgaggacccttttgctgaacttgagagcatcctgctggg |
308 |
Q |
| |
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|| | ||||||| |||||||| |||| ||||||| || || | ||||||| ||| || |||||| |||| ||||| ||||||| |||||| ||| |
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| T |
37454317 |
atggttcaataagcaaagaaaaggcaccggtggatcttagcaaatccgaagatggatctgacgaggacattttttctgaagttgagaggatcctgaaggg |
37454416 |
T |
|
| Q |
309 |
aagtccagagtctccgccaaaagcaacctgttccacaagtgatgatgttgctgtaaaagaagctttgcacaaccttgaatgcctatttgaaaattcactt |
408 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||| ||||| |||||| |
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| T |
37454417 |
aagtccagagtcctcgccaaaagcaacttgttccacaagcgatgatgttgctgtaagagaagctttgcataaccttgaatgtctattggaaaaatcactt |
37454516 |
T |
|
| Q |
409 |
gagtccattctctatgacgtagagctacagcaacaattacacacgtcattggaatgcataaaactagcaaccaatgaaaaagtttctccaaacgttgtga |
508 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||| |||| |||||| |||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |
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|
| T |
37454517 |
gagtccattctctgtgatgtagagctacaaaaacagttacgcacgtctttggaatgcataaaacaagcaacccatgaaaaagtttctccaaatgttgtga |
37454616 |
T |
|
| Q |
509 |
agcttgtccagaaaatgacatcctttattcagaacctttccaaaaactttgtcatgactaaaaatgtggttgaggatcacattaatg |
595 |
Q |
| |
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||||||||||||||||| |||||| |||||| ||||||| | | ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
37454617 |
agcttgtccagaaaatggcatcctctattcataaccttttcgatgactttgtcatgactaaaaatgctgttgaggatcacattaatg |
37454703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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