View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_40 (Length: 239)
Name: NF16571_low_40
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 10987094 - 10987211
Alignment:
| Q |
107 |
tgacaataatcatgtctcaatgtctcaatgaaggtagagttgtgtacgacaatatgtcaacaatggatatgagttatcttgcttggttggttgaccacaa |
206 |
Q |
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| T |
10987094 |
tgacaataatcatgtctcaatgtctcaatgaaggtagagttgtgcacgacaatatgtcaacaatggatatgagttatcttgcttggttgattgaccataa |
10987193 |
T |
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| Q |
207 |
tttgaaggacgttgctag |
224 |
Q |
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| T |
10987194 |
attgaaggacgttgctag |
10987211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 11106804 - 11106921
Alignment:
| Q |
107 |
tgacaataatcatgtctcaatgtctcaatgaaggtagagttgtgtacgacaatatgtcaacaatggatatgagttatcttgcttggttggttgaccacaa |
206 |
Q |
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| T |
11106804 |
tgacattactcatgactcaatgtcttagtgaaggtagagttgtgcaagacaatatgtcaacaatggatatgagttatcttgcttggttgattgaccacaa |
11106903 |
T |
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| Q |
207 |
tttgaaggacgttgctag |
224 |
Q |
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| T |
11106904 |
tttgaaggatgttgctag |
11106921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 11096109 - 11096218
Alignment:
| Q |
107 |
tgacaataatcatgtctcaatgtctcaatgaaggtagagttgtgtacgacaatatgtcaacaatggatatgagttatcttgcttggttggttgaccacaa |
206 |
Q |
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| T |
11096109 |
tgacattactcatgactcaatgtcttaatgaaggtaaagttgtgcacgacaatttgccaacagatgatttgagtgatctttcttggttgattgaccataa |
11096208 |
T |
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| Q |
207 |
tttgaaggac |
216 |
Q |
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| T |
11096209 |
tttgaaggac |
11096218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 10986997 - 10987047
Alignment:
| Q |
10 |
aagaatatgatgaaccaagagactttcttgacacaaagtgttttgaaggct |
60 |
Q |
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| T |
10986997 |
aagaaaatgatgaaccaagaaactttcttgacacaaagtgttttgaaggct |
10987047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 11106707 - 11106757
Alignment:
| Q |
10 |
aagaatatgatgaaccaagagactttcttgacacaaagtgttttgaaggct |
60 |
Q |
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| T |
11106707 |
aagaaaatgatgaaccaagagactttcttggcacaaagggttctgaaggct |
11106757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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