View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_42 (Length: 237)
Name: NF16571_low_42
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 27452734 - 27452578
Alignment:
| Q |
65 |
gtgtgatcgagggtttaatttgaaaaagaatgaagttacattgaggaaagcaagaagcgtggagaaaaagaaagatgttgcacgcagcacgcatagacag |
164 |
Q |
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| T |
27452734 |
gtgtgatcgagggtttaatttgaaaaagaatgaagttacattgaggaaagcaagaaccgtggagaaaaagaaagatgttgcacgctgcacgcatagacag |
27452635 |
T |
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| Q |
165 |
aaaatacttgatagtaaaaaatgcagataaagattcaaaccagataacagtgaagac |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27452634 |
aaaatacttgatagtaaaaaatgcagataaagattcaaaccggataacagtgaagac |
27452578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 20949371 - 20949316
Alignment:
| Q |
166 |
aaatacttgatagtaaaaaatgcagataaagattcaaaccagataacagtgaagac |
221 |
Q |
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|||||| ||| ||| ||||||||||||||||||||||||| | |||||||||||| |
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| T |
20949371 |
aaatacctgaaagtgaaaaatgcagataaagattcaaaccgcagaacagtgaagac |
20949316 |
T |
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