View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16571_low_43 (Length: 236)
Name: NF16571_low_43
Description: NF16571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16571_low_43 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 32464691 - 32464471
Alignment:
| Q |
16 |
ctaataactcagcacgacagagaatcgttgccggtggcgaagaccctcctgtcaaaacatgaaccggnnnnnnnaacggttcagttttgttgaaacttga |
115 |
Q |
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| T |
32464691 |
ctaataactcagcacgacagagaatagtcgccggtggcgaagaccctcctgtcaaaacatgaaccggtttttttaacggttcagttttgttgaaacttga |
32464592 |
T |
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| Q |
116 |
cagcatgttaagcacaaccggtgcagcacacatgtgtgttacaccatgagactcaatcaaacggtagatcgtaggcgcgtcaatcctacgcgcgcagata |
215 |
Q |
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| T |
32464591 |
cagcatgttaagcacaaccggtgcagcacacatgtgtgttacaccatgagactcaatcaaacggtagatcgtcggcgcgtcaatcctacgcgcgcagata |
32464492 |
T |
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| Q |
216 |
tttactcctccaactgcagcc |
236 |
Q |
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|||| |||||||||||||||| |
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| T |
32464491 |
tttattcctccaactgcagcc |
32464471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 60 - 236
Target Start/End: Original strand, 32456488 - 32456664
Alignment:
| Q |
60 |
cctcctgtcaaaacatgaaccggnnnnnnnaacggttcagttttgttgaaacttgacagcatgttaagcacaaccggtgcagcacacatgtgtgttacac |
159 |
Q |
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| T |
32456488 |
cctcccgttaaaacatgaaccggtttttttaacggttcagttttgttgaagtttgacagcatgttaagaacaaccggtgcagcacacatgtgtgttacac |
32456587 |
T |
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| Q |
160 |
catgagactcaatcaaacggtagatcgtaggcgcgtcaatcctacgcgcgcagatatttactcctccaactgcagcc |
236 |
Q |
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| T |
32456588 |
catgagattcaatcaaagtatagatcgtcggcgcgtctgtcctacgcgtgcagatattaattcctccaactgcagcc |
32456664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 24102 - 23920
Alignment:
| Q |
35 |
gagaatcgttgccggtggcgaagaccctcctgtcaaaacatgaaccggnnnnnnnaacggttcagttttgttgaaacttgacagcatgttaagcacaacc |
134 |
Q |
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|||||||| ||| |||||||| |||||||| ||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||| |
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| T |
24102 |
gagaatcgctgctggtggcgacgaccctccggtcaaaacatgaaccggtttttttaactgttcatttttgttgaaatttgacagcatgttaagcacaact |
24003 |
T |
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| Q |
135 |
ggtgcagcacacatgtgtgttacaccatgagactcaatcaaacggtagatcgtaggcgcgtcaatcctacgcgcgcagatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| | |||||||| |||||||| ||||||| | ||||||||| |
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| T |
24002 |
ggtgcagcacacatgtgtgttacaccatgagattcaatcagattgtagatcgatggcgcgtctgtcctacgtgtgcagatatt |
23920 |
T |
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