View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_high_13 (Length: 352)
Name: NF16572_high_13
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 154 - 338
Target Start/End: Original strand, 3322048 - 3322232
Alignment:
| Q |
154 |
ccaataaaagagtataaatatattatctatgttattgttatatttgtctcataatgttgaacaagtttttgaaaatcattaatagctgatttgttgtcac |
253 |
Q |
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| T |
3322048 |
ccaataaaagagtataaatatattatctatgttattgttatatttgtctcataatgttgaacaagtttttgaaaattattaatagttgatttgttgtcac |
3322147 |
T |
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| Q |
254 |
aaaaactttaaacctttatactttatattcaagtcaaacttgagtgaacgtataataattagactctttctttttctatcttatt |
338 |
Q |
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| T |
3322148 |
aaaaactttaagcctttatactttgtattcaagtgaaacttgagtgaacgtataataattagactctttctttttctattttatt |
3322232 |
T |
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Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 3321921 - 3321984
Alignment:
| Q |
23 |
aagtatttgaggatctaattaggagatattttgaaaataactaaattgtgttcagaaactacatgca |
89 |
Q |
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| T |
3321921 |
aagtatttgaggatctaa---ggagatattttgaaaataactaaattgtgttctgaaactacatgca |
3321984 |
T |
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