View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16572_high_23 (Length: 253)
Name: NF16572_high_23
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_high_23 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 9462854 - 9462672
Alignment:
| Q |
71 |
tggattttcttttgctaagaagattattccccttgttaaggaaaatgcacgtccaatgaaagacatcaagaaagtaagttctactactaaatcatgcact |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462854 |
tggattttcttttgctaagaagattattccccttgttaaggaaaatgcacgtccaatgaaagacatcaagaaagtaagttctactactaaatcatgcact |
9462755 |
T |
|
| Q |
171 |
tcctaaatgctatatatgtagttaaagattatttcccttgttaaggaagctatgcaacattgacaccgaagacatatctattg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9462754 |
tcctaaatgctatatatgtagttaaagattatttcccttgttaaggaagctatgcaacattgacaccgaagacatgtctattg |
9462672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 9462916 - 9462880
Alignment:
| Q |
9 |
gattattctgcagccaaagtcttggttgagtcaagtg |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462916 |
gattattctgcagccaaagtcttggttgagtcaagtg |
9462880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University