View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16572_high_5 (Length: 571)
Name: NF16572_high_5
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_high_5 |
 | |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 11 - 556
Target Start/End: Complemental strand, 12572237 - 12571689
Alignment:
| Q |
11 |
cataggtttgtttggagtttgctgttagagagaaaaatcaaagtaaaatagagcatatcagatataagcagatcacattgcacataaagaaaattaatta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12572237 |
cataggtttgtttggagtttgctgttagagagaaaaatcaaagtaaaatagagcatatcagatataagcagatcacattgcacataaagaaaattaatta |
12572138 |
T |
|
| Q |
111 |
agatagccataacatgatttactgacatcatcttgaggcgccatgaaattgtaaggtctgccaaacggagtggattcttccttccccatcaagctcgaga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
12572137 |
agatagccataacatgatttactgacatcatcttgaggcgccatgaaattgtaaggtctgccaaacggagtggattcttccttcctcatcaagctcgaga |
12572038 |
T |
|
| Q |
211 |
aacttgtgaatccggtagcttcctgaaccaaaacagcaagataatgtacaattatgaccat-aacatcacagaatatttggcagactatctgaatagtta |
309 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| |
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|
| T |
12572037 |
aacttgtgaatccagtagcttcctgaaccaaaacagcaagataatgtacaattatgaccataaacgtcacagaatatttgccagactatctgaatagtta |
12571938 |
T |
|
| Q |
310 |
cattaaaagttcatcaacaactggaccaaccataccagaccagataatggtttatcaggttcgataggttcaaactttaaagaaac--agaatttatata |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
12571937 |
cattaaaagttcatcaacaactggaccaaccataccagaccagataatggtttatcaggttcgataggttcaaactttaaagaaacaaagaatttatata |
12571838 |
T |
|
| Q |
408 |
taaaaataacaaaagtgatctatttcttttcaatcaataccaaattgaaaaaatttccttcaatttaatactgaccagtattttcaatcacaatcgcgga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12571837 |
taaaaataacaaaagtgatctatttcttttcaatcaataccaaattgaaaaaatttccttcaatttaatactgaccagtattttcaatcacaatcgcgga |
12571738 |
T |
|
| Q |
508 |
aaatggtagtttgttcaaattctgcaatgcaatagttatagtgatatat |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12571737 |
aaatggtagtttgttcaaattctgcaatgcaatagttatagtgatatat |
12571689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 4e-52; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 20019954 - 20020175
Alignment:
| Q |
7 |
gtagcataggtttgtttggagtttgctgttagagagaaaaatcaaagtaaaatagagcatatcagatataagcagatcacattgcacataaagaaaatta |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||| ||||| |||| ||||||| |
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|
| T |
20019954 |
gtagcatagggttgtttggagtttgctgttagagagaaaaatcaaattaaaatagattatatcagctaaaagcagac-----tgcacgtaaacaaaatta |
20020048 |
T |
|
| Q |
107 |
attaagatagccataacatgatttactgacatcatcttgaggcgccatgaaattgtaaggtctgccaaacggagtggattcttccttccccatcaagctc |
206 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||| ||| ||||||||| |||||||||||||||| |
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|
| T |
20020049 |
gttaagacggtcataacatgatttactgacatc---ttgaggcaccaagaaattgtaagctctgccaaatggaatggattctttcttccccatcaagctc |
20020145 |
T |
|
| Q |
207 |
gagaaacttgtgaatccggtagcttcctgaa |
237 |
Q |
| |
|
| ||||||||||||||| | ||||||||||| |
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|
| T |
20020146 |
gtgaaacttgtgaatcccg-agcttcctgaa |
20020175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 20029955 - 20030158
Alignment:
| Q |
11 |
cataggtttgtttggagtttgctgttagagagaaaaatcaaagtaaaatagagcatatcagatataagcagatcacattgcacataaag-aaaattaatt |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||| | |||||||| ||||||||| | ||||||||||| ||||||| || |
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|
| T |
20029955 |
cataggtttgtttggagtttgctgctagaaagaaaaatcaaagtaaaatatatcatatcagctataagcagtt-----tgcacataaaggaaaattagtt |
20030049 |
T |
|
| Q |
110 |
aagatagccataacatgatttactgacatcatcttgaggcgccatgaaattgtaaggtctgccaaacggagtggattcttccttccccatcaagctcgag |
209 |
Q |
| |
|
|||| | | |||||||||||||||||| ||| |||||| ||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||| |
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|
| T |
20030050 |
aagacatggtttacatgatttactgacatc---ttgcggcgccgagaaattgtaaggtctgccaaatggattggattctttcttccccattaagctcgag |
20030146 |
T |
|
| Q |
210 |
aaacttgtgaat |
221 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20030147 |
aaacttgtgaat |
20030158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 20000786 - 20000913
Alignment:
| Q |
7 |
gtagcataggtttgtttggagtttgctgttagagagaaaaatcaaagtaaaatagagcatatcagatataagcagatcacattgcacataaagaaaatta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| |||||| || | | ||||||| |||||||| |
|
|
| T |
20000786 |
gtagcataggtttgtttggagtttgctgctagagagaaaaatcaaagaaaaatagatcatatcagctataagaag-----acttcacataaggaaaatta |
20000880 |
T |
|
| Q |
107 |
attaagatagccataacatgatttactgacatc |
139 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
20000881 |
attaagactgccataacatgatttactgacatc |
20000913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 281 - 376
Target Start/End: Original strand, 20030274 - 20030369
Alignment:
| Q |
281 |
gaatatttggcagactatctgaatagttacattaaaagttcatcaacaactggaccaaccataccagaccagataatggtttatcaggttcgatag |
376 |
Q |
| |
|
||||||||||||| ||||||| ||||||| |||| | ||| || || |||||||||||||||||| ||||||| ||||||||||||||| ||||| |
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|
| T |
20030274 |
gaatatttggcaggctatctggatagttaaattagatgtttataaattactggaccaaccataccataccagatgatggtttatcaggtttgatag |
20030369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 20010535 - 20010648
Alignment:
| Q |
7 |
gtagcataggtttgtttggagtttgctgttagagagaaaaatcaaagtaaaatagagcatatcagatataagcagatcacattgcacataaagaaaatta |
106 |
Q |
| |
|
|||||| || |||||||| |||| | |||||||||||||||||||||||||||||| |||||||| ||| ||||| || |||||||||| ||||||| |
|
|
| T |
20010535 |
gtagcagagctttgtttgaagttcgttgttagagagaaaaatcaaagtaaaatagatcatatcagctatgagcag-tc----tgcacataaataaaatta |
20010629 |
T |
|
| Q |
107 |
attaagatagccataacat |
125 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
20010630 |
gttaagacagacataacat |
20010648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 280 - 459
Target Start/End: Original strand, 20001084 - 20001254
Alignment:
| Q |
280 |
agaatatttggcagactatctgaatagttacattaaaagttcatcaacaactggaccaaccataccagaccagataatgg-tttatcaggttcgataggt |
378 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| ||| |||||| |||||||||||| ||||||| ||| ||||||| |
|
|
| T |
20001084 |
agaatatttggcagactatctggatatttacattaaaagttcat------------taactataccacaccagataatggttttatcaagtttgataggt |
20001171 |
T |
|
| Q |
379 |
tcaaactt---taaagaaacagaatttatatataaaaataacaaaagtgatctatttcttttcaatcaataccaaattgaaaaa |
459 |
Q |
| |
|
| |||||| ||| ||| ||| || || |||||| | || |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20001172 |
ttaaacttcgaaaaacaaagagatttcatgtataaata-aataaaaccgatctatttcttttcaatcaataccaaattgaaaaa |
20001254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 439
Target Start/End: Original strand, 20020241 - 20020340
Alignment:
| Q |
341 |
ataccagaccagataatggtttatcaggttcgataggttcaaacttt--aaagaaacagaatttatatataaaaataacaaaagtgatctatttcttttc |
438 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||| ||| ||| ||| ||| ||| ||||| |||||| | || ||||||||| ||||||||||| |
|
|
| T |
20020241 |
ataccataccagataatggtttattaggtttgataggtttaaattttgaaaaaaaaaagattttatttataaata-aataaaagtgatttatttcttttc |
20020339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 35039546 - 35039327
Alignment:
| Q |
7 |
gtagcataggtttgtttggagtttgctgttagagagaaaaatcaaagtaaaatagag--catatcagatataagcagatcacattgcacataaagaaaat |
104 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| |||||||||| | || ||||| || |||||||||| ||| |||||| |||| |
|
|
| T |
35039546 |
gtagcataggtttgtttggggtttgctgatagagagaaaaggcaaagtaaaaaaaagatcatatgagctataagcagacgaca-----cataaataaaac |
35039452 |
T |
|
| Q |
105 |
taattaagatagccataacatgatttactgacatcatcttgaggcgccatgaaattgtaaggtctgccaaacggagtggattcttccttccccatcaagc |
204 |
Q |
| |
|
|| | ||||||||||||||||||||| ||| ||||| | ||| | ||||||||||||||| ||| ||| ||||||||| |||| |||| |||| |
|
|
| T |
35039451 |
-----aacacagccataacatgatttactgatatc---ttgagacaccaaggaattgtaaggtctgcgaaatggattggattctttcttctccattaagc |
35039360 |
T |
|
| Q |
205 |
tcgagaaacttgtgaatccggtagcttcctgaa |
237 |
Q |
| |
|
| ||||| |||||| ||| ||||||||||||| |
|
|
| T |
35039359 |
ttgagaagcttgtgcatctcgtagcttcctgaa |
35039327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 35038818 - 35038881
Alignment:
| Q |
8 |
tagcataggtttgtttggagtttgctgttagagagaaaaatcaaagtaaaatagagcatatcag |
71 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||| |
|
|
| T |
35038818 |
tagcataggtttgtttggagtttgctcctattgagaaaaatcaaagtaaaaaagatcatatcag |
35038881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 48301284 - 48301511
Alignment:
| Q |
7 |
gtagcataggtttgtttggagtttgctgttagagagaaaaatcaaagtaaaatagagcatatcagatataagcagat-cacattgcacataaagaaaatt |
105 |
Q |
| |
|
|||||||||| |||| ||||||||| || |||| |||||||| ||| ||||||||||||||| || ||| | | | || | ||| || | ||||||| |
|
|
| T |
48301284 |
gtagcataggattgtatggagtttgttgctagaaagaaaaataaaaataaaatagagcatattagctatgactataagcagactgcgcaga--gaaaatt |
48301381 |
T |
|
| Q |
106 |
aattaagatagccataacatgatttactgacatcatcttgaggcgccatgaaattgtaaggtctgccaaacggagtggattcttccttccccatcaagct |
205 |
Q |
| |
|
| |||||||||| ||||||||||||||||||| |||||||||| | |||| ||||||||| ||| | ||| | ||||||| |||| |||||| || |
|
|
| T |
48301382 |
agttaagatagcaataacatgatttactgaca--atcttgaggcagaacaaaatagtaaggtcttccagatggatcgaattcttctttcctcatcaaact |
48301479 |
T |
|
| Q |
206 |
cgagaaacttgtgaatccggtagcttcctgaa |
237 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |
|
|
| T |
48301480 |
tgagaaacttgataatccagtagcttcctgaa |
48301511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 16497 - 16623
Alignment:
| Q |
7 |
gtagcataggtttgtttggagtttgctgttagagagaaaaatcaaagtaaaatagagcatatcagatataagca-gatcacattgcacataaagaaaatt |
105 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||||||||| |||| ||| | ||| || ||||| | | || | |||||||| ||||| || |
|
|
| T |
16497 |
gtagcataggattgtttggaatttgctgttagaaagaaaaatcaacacaaaacagaacttattagctataactataagcagaatgcacatagagaaagtt |
16596 |
T |
|
| Q |
106 |
aattaagatagccataacatgatttac |
132 |
Q |
| |
|
| ||||||||| ||||||||||||||| |
|
|
| T |
16597 |
acttaagatagtcataacatgatttac |
16623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 912438 - 912488
Alignment:
| Q |
183 |
gattcttccttccccatcaagctcgagaaacttgtgaatccggtagcttcc |
233 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
912438 |
gattcttctttccccatcaagctcaagaaacttgtgaatccaatagcttcc |
912488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 505 - 541
Target Start/End: Original strand, 39078915 - 39078951
Alignment:
| Q |
505 |
ggaaaatggtagtttgttcaaattctgcaatgcaata |
541 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39078915 |
ggaaaatggtggtttgttcaaattctgcaatgcaata |
39078951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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