View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_high_7 (Length: 484)
Name: NF16572_high_7
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 265 - 474
Target Start/End: Complemental strand, 19644090 - 19643881
Alignment:
| Q |
265 |
aatggcaaatatatataaagaagatacggaagatacaatgtacaaaggatgaaaatgattgtctaatggacaaaattagacaatgaatttgaaggaaaaa |
364 |
Q |
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| T |
19644090 |
aatggcaaatatatataaagaagatacggaagatacaatgtacaaaggatgaaaatgattgtctaatggacaaaattagacaatgaatttgaaggaaaaa |
19643991 |
T |
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| Q |
365 |
tgataatatgaaaggttagcaacaatgaacaaacagtaaatagatatatttgttatggcctttgcaagaatagtaaacaaacccgttgatttagcactta |
464 |
Q |
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| T |
19643990 |
taataatatgaaaggttagcaacaatgaacaaacagtaaatagatatatttgttatggcctttgcaagaatagtaaacaaacccgttgatttagcactta |
19643891 |
T |
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| Q |
465 |
tctccctatg |
474 |
Q |
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| T |
19643890 |
tttccttatg |
19643881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 19644540 - 19644340
Alignment:
| Q |
19 |
tttattcattcatcattcatcgtaagactctctaattactatttcaagggacttctctattaacttcactatcattatagtttagtaacataatatatgt |
118 |
Q |
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| T |
19644540 |
tttattcattcgttattcatcgtaagactctctaattactatttcaagggacttctctattaacttcactatcattatagtttagtaacataatatatga |
19644441 |
T |
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| Q |
119 |
gtttgttcgcgcacgtgcatgcatgcggttaccatttagtttgaacatatgagaacatgataatcactgttaattgtattccttatatgactacccagat |
218 |
Q |
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| T |
19644440 |
gtttgttcgcgcacatgcatgcatgcggttaccatttagcttgaacatatgaaaacatgataatcattgttaattgtgttccttatttgactacccagat |
19644341 |
T |
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| Q |
219 |
g |
219 |
Q |
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| T |
19644340 |
g |
19644340 |
T |
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