View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_low_11 (Length: 453)
Name: NF16572_low_11
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 7652046 - 7652350
Alignment:
| Q |
2 |
gattattctgatgaggagtttgattatgaaatagagaatcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatg |
101 |
Q |
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| T |
7652046 |
gattattctgatgaggagtttgattatgaaatagagaatactttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatg |
7652145 |
T |
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| Q |
102 |
ctcaaaagatcagtgcaggaaatggtggaggcattgaaataaaaggtggtggcggaagtggtggagtacctatgcctgttcaagttcattccttggctgg |
201 |
Q |
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| T |
7652146 |
ctcaaaagatcagtgcaggaaatggtggaggcattgaaataaaaggtggtggcggaagtgttggaggacctatgcctgttcaagttcattccttggctgg |
7652245 |
T |
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| Q |
202 |
tggaaatgggaatggaggaaagaaaggtggtggtggcgacggtggaaataatcagagtcagaatcaaggtggaatgccagagggtaaaaatggaaataag |
301 |
Q |
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| T |
7652246 |
tggaaatgggaatggaggaaagaaaggtggtggtggcgaaggtggaaataatcagattcagaatcaaggtggaatgccagaaggtaaaaatggaaataag |
7652345 |
T |
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| Q |
302 |
aatgt |
306 |
Q |
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||||| |
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| T |
7652346 |
aatgt |
7652350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 7657456 - 7657560
Alignment:
| Q |
5 |
tattctgatgaggagtttgattatgaaatagagaatcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctc |
104 |
Q |
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| T |
7657456 |
tattctgatgaggagtttgatgatgagatggaacatcctttgaataagatgaaactacctatggggggtaatggtcctgctcacatgatgatgaatgctc |
7657555 |
T |
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| Q |
105 |
aaaag |
109 |
Q |
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| T |
7657556 |
aaaag |
7657560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 7652370 - 7652459
Alignment:
| Q |
341 |
attccaaataacaatgtgggtaaaaaggtaattggaatgggagaaagtggtgttcaaggtgtgatgaataatggcctcccaaacatgggt |
430 |
Q |
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| T |
7652370 |
attccaaataacaatgtgggtaaaaaggtaaatggaatgggagaaagtggtgttcaaggtatgataaataatggacttccaaacatgggt |
7652459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 341 - 430
Target Start/End: Original strand, 7657792 - 7657881
Alignment:
| Q |
341 |
attccaaataacaatgtgggtaaaaaggtaattggaatgggagaaagtggtgttcaaggtgtgatgaataatggcctcccaaacatgggt |
430 |
Q |
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| T |
7657792 |
attccaaataacaatgtgggtaaaaaggtaaatggaatgggagaaagtggtgttcaaggtatgataaataatggacttccaaacatgggt |
7657881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 7657639 - 7657695
Alignment:
| Q |
218 |
ggaaagaaaggtggtggtggcgacggtggaaataatcagagtcagaatcaaggtgga |
274 |
Q |
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| T |
7657639 |
ggaaagaaaggtggtggtggtggtggcggaaataatcagagtcagaatcaaggtgga |
7657695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 7657725 - 7657763
Alignment:
| Q |
268 |
aggtggaatgccagagggtaaaaatggaaataagaatgt |
306 |
Q |
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| T |
7657725 |
aggtggaatgccagagggtaaaaatggaaataagaatgt |
7657763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 48572934 - 48572896
Alignment:
| Q |
199 |
tggtggaaatgggaatggaggaaagaaaggtggtggtgg |
237 |
Q |
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| T |
48572934 |
tggtggaaatggcaatggaggaaagaaaggtggtggtgg |
48572896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 48538612 - 48538558
Alignment:
| Q |
203 |
ggaaatgggaatggaggaaagaaaggtggtggtggcgacggtggaaataatcaga |
257 |
Q |
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| T |
48538612 |
ggaaatggcaatggaggaaagaaaggtggcggtggtggtggaggaaataatcaga |
48538558 |
T |
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