View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_low_16 (Length: 341)
Name: NF16572_low_16
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 14 - 325
Target Start/End: Complemental strand, 4845761 - 4845450
Alignment:
| Q |
14 |
atattactcttaatctatatgatatgtaatataacaatttttattttggaagtttgccgggaacaaaaagagttgtgtgacaactactatggtatgagtg |
113 |
Q |
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| T |
4845761 |
atattactcttaatctatatgatatgtaatataacaatttttattttggaagtttgccgggaacaaaaagagttgtgtgacaactactatggtatgagtg |
4845662 |
T |
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| Q |
114 |
atgcttattaaatcactactttccttctaaacaaaaattatgtatgcttttatgttactaattatgtgttgaagccatgcttaaatatgattttgtttct |
213 |
Q |
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| T |
4845661 |
atgcttattaaatcactactttccttctaaacaaaaattatgtatgcatttatgttactaattatgtgttgaagccatccttaaatatgattttgtttct |
4845562 |
T |
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| Q |
214 |
ttgaagctaaatgcatcacacagtggaagaggcacaacaaataccttatcttgagaacttttcgctccaacatatgatccatgtttcaaaaaatggtgta |
313 |
Q |
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| T |
4845561 |
ttgaagctaaatgcatcacacagtggaagaggcacaacaaataccttatcttgagaacttttcgctccaacgtatgatccatgtttcaaaaaatggtgta |
4845462 |
T |
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| Q |
314 |
tagagtttagag |
325 |
Q |
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| T |
4845461 |
tagagtttagag |
4845450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 4800486 - 4800398
Alignment:
| Q |
57 |
ttttggaagtttgccgggaacaaaaagagttgtgtgacaactactatggtatgagtgatgcttattaaatcactactttccttctaaac |
145 |
Q |
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| T |
4800486 |
ttttgaaagttttccaggaacaaaaagagttctgttacaactactatggtatgagtgatgcttattaaatcactactttcctcctaaac |
4800398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 4800342 - 4800246
Alignment:
| Q |
142 |
aaacaaaaattatgtatgcttttatgttactaattatgtgttgaagcca-tgcttaaatatgattttgtttctttgaagctaaatgcatcacacagt |
237 |
Q |
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| T |
4800342 |
aaacaaaaattatgtatgcatttattttactaattatgtgttgaagccattccttaaagatgattttgtttctatgaatccaaatgcaccaaacagt |
4800246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 4772316 - 4772225
Alignment:
| Q |
31 |
tatgatatgtaatataacaatttttattttggaagtttgccgggaacaa--aaagagttgtgtgacaactactatggtatgagtgatgctta |
120 |
Q |
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| T |
4772316 |
tatgatatgtaatatagtaatttgtattttgaaagttttctgtgaacaagaaaagagttgtgtgccaactactttagtatgagtgatgctta |
4772225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 4790128 - 4790042
Alignment:
| Q |
31 |
tatgatatgtaatataacaatttttattttggaagtttgccgggaacaaaaagagttgtgtgacaactactatggtatgagtgatgctta |
120 |
Q |
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| T |
4790128 |
tatgatatgtaatataataatatgtattttgaaagtttaccag--aaagaaagagttgtgtgccaactactat-atatgagtgatgctta |
4790042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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