View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16572_low_19 (Length: 319)

Name: NF16572_low_19
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16572_low_19
NF16572_low_19
[»] chr2 (3 HSPs)
chr2 (16-305)||(8020699-8020988)
chr2 (11-66)||(22400494-22400550)
chr2 (11-66)||(22791940-22791996)
[»] chr3 (23 HSPs)
chr3 (27-212)||(28151610-28151795)
chr3 (27-151)||(17744491-17744615)
chr3 (27-151)||(19045811-19045935)
chr3 (27-198)||(28037413-28037584)
chr3 (27-197)||(11420963-11421133)
chr3 (27-169)||(28149970-28150112)
chr3 (205-293)||(28151276-28151364)
chr3 (27-152)||(27954347-27954471)
chr3 (74-170)||(27458885-27458981)
chr3 (27-123)||(28161925-28162021)
chr3 (33-152)||(8539262-8539381)
chr3 (27-123)||(28185968-28186064)
chr3 (27-152)||(27920262-27920389)
chr3 (60-169)||(27776525-27776634)
chr3 (27-104)||(28479860-28479937)
chr3 (27-104)||(28509043-28509120)
chr3 (104-169)||(28056547-28056612)
chr3 (104-169)||(28066972-28067037)
chr3 (239-290)||(28054960-28055011)
chr3 (239-290)||(28065385-28065436)
chr3 (239-291)||(8539704-8539756)
chr3 (239-287)||(28149203-28149251)
chr3 (205-233)||(28161470-28161498)
[»] scaffold0257 (2 HSPs)
scaffold0257 (30-170)||(19079-19219)
scaffold0257 (239-285)||(18626-18672)
[»] scaffold0922 (1 HSPs)
scaffold0922 (27-93)||(1819-1885)
[»] chr4 (2 HSPs)
chr4 (205-233)||(9328792-9328820)
chr4 (205-233)||(9382569-9382597)


Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 8020988 - 8020699
Alignment:
Q  16 agaagaaggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactag 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020988 agaagaaggttaacttcaaaatgaaaagggcgatgagataacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactag 8020889  T
Q  116 tttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttggttgtcaccttcttcaac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8020888 tttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctatagctctttggttgtcaccttcttcaac 8020789  T
Q  216 acttatttcgctaacctgtcaatattgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaagaaatatgtatatatt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8020788 acttatttcgctaacctgtcaatattgtggtataattcaattccggtactgacaaagtgtaaaaaagaatacaagaaatatgtatatatt 8020699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 22400550 - 22400494
Alignment:
Q  11 gagagagaaga-aggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaa 66  Q
    ||||||||||| || ||||||||||||| |||||||  |||||||||| ||||||||    
T  22400550 gagagagaagagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaa 22400494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 22791996 - 22791940
Alignment:
Q  11 gagagagaaga-aggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaa 66  Q
    ||||||||||| || ||||||||||||| |||||||  |||||||||| ||||||||    
T  22791996 gagagagaagagagtttaacttcaaaatcaaaagggttatgaggtaacataagaaaa 22791940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 28151795 - 28151610
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 126  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  28151795 aacttcaaaataaaaagggcgatgaggtaacttaagaaaataaaagcgatccaaagattcttcaccttgatcatcattagtgttactagtttcctgccag 28151696  T
Q  127 atttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttggttgtcaccttcttc 212  Q
    |||||||||||||||||||||||||||| ||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||    
T  28151695 atttcaacatcaacatcttgagtggttacaggctttgttatgtcaattggagtataagctattgctctttggttgtcaccttcttc 28151610  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 17744491 - 17744615
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 126  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| || |||| | || |||||||| || |||||||||||||||    
T  17744491 aacttcaaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccag 17744590  T
Q  127 atttcaacatcaacatcttgagtgg 151  Q
    |||||||||||||||||||||||||    
T  17744591 atttcaacatcaacatcttgagtgg 17744615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 19045811 - 19045935
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 126  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| || |||| | || |||||||| || |||||||||||||||    
T  19045811 aacttcaaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccag 19045910  T
Q  127 atttcaacatcaacatcttgagtgg 151  Q
    |||||||||||||||||||||||||    
T  19045911 atttcaacatcaacatcttgagtgg 19045935  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 198
Target Start/End: Complemental strand, 28037584 - 28037413
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 126  Q
    ||||||||||||||||||| ||||||||||||| |||||| || || |||||||||| |||| |||| || | ||||||||||||||||||||  |||||    
T  28037584 aacttcaaaatgaaaagggtgatgaggtaactttagaaaataacactgatccaaagagtctttaccttgaccatcattagtgttactagtttcgcgccag 28037485  T
Q  127 atttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttgg 198  Q
     |||  | ||||||||||| |||||| | ||||||||||||||  ||||||| ||||||||| |||||||||    
T  28037484 tttttgagatcaacatcttcagtggtaacaggctttgttatggtaattgaaggagaagctatggctctttgg 28037413  T

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Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 11421133 - 11420963
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 126  Q
    |||||| |||||||||||| ||||  |||||||||||||| ||||| |||||||||| || |||||| |||| |||||||  |||||||||||||| |||    
T  11421133 aacttctaaatgaaaagggtgatgtcgtaacttaagaaaataaaactgatccaaagagtcatcaccttgatcatcattagccttactagtttcctgacag 11421034  T
Q  127 atttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattgctctttg 197  Q
    |||| |||||||||||||||| ||||   ||||||||||||||| |||  || ||||||||| ||| ||||    
T  11421033 attttaacatcaacatcttgaatggtagcaggctttgttatggcaatttgaggagaagctatggctatttg 11420963  T

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Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 28150112 - 28149970
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 126  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||  ||||| |||| ||||||||| |||| |||||||||||||||||||||||| ||    
T  28150112 aacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatcctaagactcttcaccttgatcatcattagtgttactagtttcctgcaag 28150013  T
Q  127 atttcaacatcaacatcttgagtggttagaggctttgttatgg 169  Q
     | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28150012 ttattaacatgaacttcttgagtggtaagaggccttgttatgg 28149970  T

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Target: chr3; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 28151364 - 28151276
Alignment:
Q  205 ccttcttcaacacttatttcgctaacctgtcaatattgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaagaaa 293  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||| |||||||||||||||||    
T  28151364 ccttcttcaacacttatttcgctaacctgtcaatattgtagtataattcaatttctgtactgacaaagtgtgaaaaagaatacaagaaa 28151276  T

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Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 27954471 - 27954347
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 126  Q
    ||||||||||||||||||  |||||||||||||| ||||| || ||  ||||||||| | ||||||| |||| |||||||||||||||||||||||||||    
T  27954471 aacttcaaaatgaaaaggt-gatgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgccag 27954373  T
Q  127 atttcaacatcaacatcttgagtggt 152  Q
    |||| | ||||||||| |||||||||    
T  27954372 attttatcatcaacatattgagtggt 27954347  T

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Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 27458885 - 27458981
Alignment:
Q  74 gatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggc 170  Q
    |||||||||| ||||||||| |||| || ||||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  27458885 gatccaaagagtcttcaccttgatcatccttagtcttgctagtttcctgccagattttaacatcaacatcttgagtggtaagaggctttgttatggc 27458981  T

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Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 28162021 - 28161925
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc 123  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||  |||||||||| ||||||||| |||| ||||||||||||||||||||||||    
T  28162021 aacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcattagtgttactagtttcctgc 28161925  T

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Target: chr3; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 8539262 - 8539381
Alignment:
Q  33 aaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttca 132  Q
    ||||||||||||| ||  |||||||||||||||| ||||| ||||||| |||||||||||| |||    |||||||||||||||||||||||| | || |    
T  8539262 aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagttta 8539361  T
Q  133 acatcaacatcttgagtggt 152  Q
    ||||||||||||||||||||    
T  8539362 acatcaacatcttgagtggt 8539381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 28186064 - 28185968
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc 123  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||  |||||||||| ||||||||| |||| |||| |||||||||||||||||||    
T  28186064 aacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcatcagtgttactagtttcctgc 28185968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 27920389 - 27920262
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaa---cttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc 123  Q
    ||||||||||||||||||  ||||||||||   |||| ||||| || ||  ||||||||| | ||||||| |||| ||||||||||||||||||||||||    
T  27920389 aacttcaaaatgaaaaggt-gatgaggtaattgcttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgc 27920291  T
Q  124 cagatttcaacatcaacatcttgagtggt 152  Q
    ||||||| | ||||||||| |||||||||    
T  27920290 cagattttatcatcaacatattgagtggt 27920262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 27776634 - 27776525
Alignment:
Q  60 aagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggc 159  Q
    ||||||| ||||  |||||||||| | ||||||| |||  |||||||| ||||||||||||||| || |||||||||||||||||||||| ||  |||||    
T  27776634 aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgcaagttttcaacatcaacatcttgagtagtaggaggc 27776535  T
Q  160 tttgttatgg 169  Q
    ||||||||||    
T  27776534 tttgttatgg 27776525  T

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Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 28479860 - 28479937
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcatt 104  Q
    |||||||||||| |||||| |||||||||| ||||||||| ||||  |||||||||| ||||||||| |||| |||||    
T  28479860 aacttcaaaatgcaaagggtgatgaggtaaattaagaaaataaaattgatccaaagagtcttcaccttgatcatcatt 28479937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 28509043 - 28509120
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcatt 104  Q
    |||||||||||| |||||| |||||||||| ||||||||| ||||  |||||||||| ||||||||| |||| |||||    
T  28509043 aacttcaaaatgcaaagggtgatgaggtaaattaagaaaataaaattgatccaaagagtcttcaccttgatcatcatt 28509120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 28056612 - 28056547
Alignment:
Q  104 tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 169  Q
    |||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28056612 tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28056547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 28067037 - 28066972
Alignment:
Q  104 tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 169  Q
    |||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28067037 tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28066972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 28055011 - 28054960
Alignment:
Q  239 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaag 290  Q
    ||||| ||||||||||||||| | ||||||||||||| ||||| ||||||||    
T  28055011 attgtagtataattcaattcctgcattgacaaagtgttaaaaaaaatacaag 28054960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 28065436 - 28065385
Alignment:
Q  239 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaag 290  Q
    ||||| ||||||||||||||| | ||||||||||||| ||||| ||||||||    
T  28065436 attgtagtataattcaattcctgcattgacaaagtgttaaaaaaaatacaag 28065385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 8539704 - 8539756
Alignment:
Q  239 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatacaaga 291  Q
    ||||| ||||||||||||||| | ||||  ||||||| |||||||||||||||    
T  8539704 attgtagtataattcaattcctgcattggaaaagtgttaaaaagaatacaaga 8539756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 28149251 - 28149203
Alignment:
Q  239 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaatac 287  Q
    ||||| ||||||||||||||| | |||||||||||||  ||||||||||    
T  28149251 attgtagtataattcaattcctgcattgacaaagtgttcaaaagaatac 28149203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 28161498 - 28161470
Alignment:
Q  205 ccttcttcaacacttatttcgctaacctg 233  Q
    |||||||||||||||||||||||||||||    
T  28161498 ccttcttcaacacttatttcgctaacctg 28161470  T

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Target: scaffold0257 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 19219 - 19079
Alignment:
Q  30 ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt 129  Q
    |||||||||||||||| |||||||||||||||||||| || |  |||||||||| ||||||||| |||| ||| || ||||||||||||||||| || |     
T  19219 ttcaaaatgaaaagggtgatgaggtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagtta 19120  T
Q  130 tcaacatcaacatcttgagtggttagaggctttgttatggc 170  Q
    | ||||||||||||||||||||| |||||||||||||||||    
T  19119 ttaacatcaacatcttgagtggtaagaggctttgttatggc 19079  T

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Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 18672 - 18626
Alignment:
Q  239 attgtggtataattcaattccggtattgacaaagtgtaaaaaagaat 285  Q
    ||||| ||||||||||||||| | ||||||||||||| |||||||||    
T  18672 attgtagtataattcaattcctgcattgacaaagtgtcaaaaagaat 18626  T

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Target: scaffold0922 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 1885 - 1819
Alignment:
Q  27 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacct 93  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||  ||| | |||||||||    
T  1885 aacttcaaaatgaaaagggtgatgtggtaacttaagaaaataaaaccgattgaaatactcttcacct 1819  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 9328792 - 9328820
Alignment:
Q  205 ccttcttcaacacttatttcgctaacctg 233  Q
    |||||||||||||||||||||||||||||    
T  9328792 ccttcttcaacacttatttcgctaacctg 9328820  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 9382569 - 9382597
Alignment:
Q  205 ccttcttcaacacttatttcgctaacctg 233  Q
    |||||||||||||||||||||||||||||    
T  9382569 ccttcttcaacacttatttcgctaacctg 9382597  T

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