View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_low_2 (Length: 664)
Name: NF16572_low_2
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 150 - 454
Target Start/End: Original strand, 16159361 - 16159665
Alignment:
| Q |
150 |
atgacagtgtgtcttctgttggtatggatctctcctctgttccaaagcttggtccacgtgtaagggtgtctgttgaagaggatttcctacgcatgcatcc |
249 |
Q |
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| T |
16159361 |
atgacagtgtgtcttctgttggtataaatatctcctctgttccaaagcttggtccatgtgtaagggcgtctgttcaagaggatttcctacacatgcatcc |
16159460 |
T |
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| Q |
250 |
taagaagacgctggctcaattgcacgatactcctgaggatggaacatttgtcgtttatgcgactgttgatggctttgtggatggtgaggattggtggtat |
349 |
Q |
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| T |
16159461 |
taagaagaccctggctcaattgcacgatactcctgaggatggaacatttgtcgtatatgcgacttttaatggctttgtggatggcgaggattgttggtat |
16159560 |
T |
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| Q |
350 |
ccggcttgcaaatgccatcggagtgttgctcctgattccggagcgtattactgtaagggatgtgtcaagcacgtttttcagatggtgcctaggtatgacg |
449 |
Q |
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| T |
16159561 |
ccggcttgcaaatgccatcggagcgttgctcctgattccgaagcgtactattgtaagggatgtgtcaagaacgtttttcagatggtgcctaggtatgacg |
16159660 |
T |
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| Q |
450 |
atgta |
454 |
Q |
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||||| |
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| T |
16159661 |
atgta |
16159665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 518 - 659
Target Start/End: Original strand, 16159729 - 16159871
Alignment:
| Q |
518 |
agacatcatatggttatgaactgaatgacattgaagtttaacgcatgattaattcgt-gtgttgtccttaggtatagggttaagattaatgtgagtgatg |
616 |
Q |
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| T |
16159729 |
agacatcatatgattatgaactgaatgacattgaagtttgatgcatgatgtatttgttgtgttgtccttaggtatagggttaagattaatgtgagtgatg |
16159828 |
T |
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| Q |
617 |
caaccagtgtggcagtgtttgttatgtttgatgatgatgtcca |
659 |
Q |
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| T |
16159829 |
caaccagcgtggcagtgtttgttatgtttgctggtgatgtcca |
16159871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 16159229 - 16159274
Alignment:
| Q |
18 |
ataaatcctccgatagaggaggcggctcgagttaggaaaaggtttt |
63 |
Q |
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| T |
16159229 |
ataaatcctccgatagaggaggcggcttgagttaggaaaaggtttt |
16159274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 338 - 445
Target Start/End: Original strand, 33437674 - 33437781
Alignment:
| Q |
338 |
gattggtggtatccggcttgcaaatgccatcggagtgttgctcctgattccggagcgtattactgtaagggatgtgtcaagcacgtttttcagatggtgc |
437 |
Q |
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| T |
33437674 |
gattggtggtatccagcctgtaaatgccataggagtgtgtctgctgattctggtgcgttttactgtaaggggtgtgccaagcatgtttttcagatggtcc |
33437773 |
T |
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| Q |
438 |
ctaggtat |
445 |
Q |
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| T |
33437774 |
caaggtat |
33437781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 338 - 445
Target Start/End: Complemental strand, 33614033 - 33613926
Alignment:
| Q |
338 |
gattggtggtatccggcttgcaaatgccatcggagtgttgctcctgattccggagcgtattactgtaagggatgtgtcaagcacgtttttcagatggtgc |
437 |
Q |
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| T |
33614033 |
gattggtggtatcctgcctgtaaatgccataggagtgtgtcagctgattctggtgcgttttactgtaaggggtgtgccaagcatgtttttcagatggtcc |
33613934 |
T |
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| Q |
438 |
ctaggtat |
445 |
Q |
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| T |
33613933 |
caaggtat |
33613926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 435
Target Start/End: Original strand, 36944441 - 36944547
Alignment:
| Q |
329 |
gatggtgaggattggtggtatccggcttgcaaatgccatcggagtgttgctcctgattccggagcgtattactgtaagggatgtgtcaagcacgtttttc |
428 |
Q |
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||||| ||||||||||||||||| || || || |||||| ||||||| | ||||||||||| || |||||||| |||| ||||| ||||| || |||| |
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| T |
36944441 |
gatggggaggattggtggtatcctgcctgtaagtgccataggagtgtcacccctgattccggtgcatattactgcaaggattgtgtgaagcatgtctttc |
36944540 |
T |
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| Q |
429 |
agatggt |
435 |
Q |
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| T |
36944541 |
atatggt |
36944547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 435
Target Start/End: Original strand, 20551222 - 20551348
Alignment:
| Q |
309 |
cgactgttgatggctttgtggatggtgaggattggtggtatccggcttgcaaatgccatcggagtgttgctcctgattccggagcgtattactgtaaggg |
408 |
Q |
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| T |
20551222 |
cgactattgatggattggttgatggcgaggattggtggtatcctgcctgtaaatgacataggagcgttacaccttattctggtgcctattactgcaagga |
20551321 |
T |
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| Q |
409 |
atgtgtcaagcacgtttttcagatggt |
435 |
Q |
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| T |
20551322 |
ttatgttaagcacgttttccatatggt |
20551348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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