View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_low_22 (Length: 268)
Name: NF16572_low_22
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 40243113 - 40242862
Alignment:
| Q |
9 |
gacatcatcacgaaagagaaaa-ttagtaagcatcaacacagaatgagggatcatctacaatctgtcatgaagaaaactacgaattttaagttacctcct |
107 |
Q |
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| T |
40243113 |
gacatcatcacgaaagagaaaaattagtaagcatcaacacagaatgagggatcatctacaatctgtcatgaagaaaactacgaattgtaagttacctcct |
40243014 |
T |
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| Q |
108 |
ctgctagcttggtcaaattggtgccatactcctccaaagttggcatcttattgttactacttccagagccaacagtagccccaacactatcagcaccctc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40243013 |
ctgctagcttggtcaaattggtgccatactcctccaaagttggcatcttattgttactacttccagagccaacagtagccccaacactatcagcaccctc |
40242914 |
T |
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| Q |
208 |
accaaccatgcgaataacctgttcccatcaaatggagtacaaaattaacaca |
259 |
Q |
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| T |
40242913 |
accaaccatgcgaataacctgttcccatcaaatggagtacaagattaacaca |
40242862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 47380014 - 47379836
Alignment:
| Q |
65 |
acaatctgtcatgaagaaaactacgaattttaagttacctcctctgctagcttggtcaaattggtgccatactcctccaaagttggcatcttattgttac |
164 |
Q |
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| T |
47380014 |
acaatctgtcattgagaaaactagga-ttgtaagttacctcctctgctagcttggtcaaattggtgccatactcctccaaagttggcatcttgctattac |
47379916 |
T |
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| Q |
165 |
tacttccagagccaacagtagccccaacactatcagcaccctcaccaaccatgcgaataacctgttcccatcaaatggag |
244 |
Q |
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| T |
47379915 |
tacttccagagccaacagtagccccaacattgtcagcaccctcaccaaccatgcgaataacctgttcccctcaagtggag |
47379836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 45112170 - 45112002
Alignment:
| Q |
58 |
atcatctacaatctgtcatgaagaaaactacgaattttaagttacctcctctgctagcttggtcaaattggtgccatactcctccaaagttggcatctta |
157 |
Q |
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||||||||| || ||||| |||||||||| ||| | | | ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | ||| |
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| T |
45112170 |
atcatctaccattggtcattaagaaaactaggaactgtca-ttacctcttctgctagcttggtcaaattggttccatactcctccaaagttggcgtttta |
45112072 |
T |
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| Q |
158 |
ttgttactacttccagagccaacagtagccccaacactatcagcaccctcaccaaccatgcgaataacct |
227 |
Q |
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| T |
45112071 |
ttgttactacttcctgagccaacagtagcagtaacattgtcagcactctcacccaccatgcgaataacct |
45112002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 238
Target Start/End: Complemental strand, 47815478 - 47815304
Alignment:
| Q |
59 |
tcatctacaatctgtcatgaagaaaactacgaattttaagttacctcctctgctagcttggtcaaattggtgccatac--------tcctccaaagttgg |
150 |
Q |
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| T |
47815478 |
tcatcaacaatctgtcattaagaaaactagga-ttgtaagttacctcctctgctagcttggtcaaattggtgccatactgccatattcctccaaagttgg |
47815380 |
T |
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| Q |
151 |
catcttattgttactacttccagagccaacagtagccccaacactatcagcaccctcaccaaccatgcgaataacctgttcccatcaa |
238 |
Q |
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| T |
47815379 |
catcttgctattactacttcc------------agcaccaacattgtcaccaccctcaccaaccatgcgaataacctgttcccctcaa |
47815304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 238
Target Start/End: Complemental strand, 17717221 - 17717055
Alignment:
| Q |
59 |
tcatctacaatctgtcatgaagaaaactacgaattttaagttacctcctctgctagcttggtcaaattggtgccatactcctccaaagttggcatcttat |
158 |
Q |
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| T |
17717221 |
tcatcaacaatctgtcattaagaaaactagga-ttgtaagttacctcctccgctagcttgatcaaattggtgccatattcctccaaagttggcatcttgc |
17717123 |
T |
|
| Q |
159 |
tgttactacttccagagccaacagtagccccaacactatcagcaccctcaccaaccatgcgaataacctgttcccatcaa |
238 |
Q |
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| T |
17717122 |
tattactacttcc------------agcaccaacattgtcaccaccctcaccaaccatgcgaataacctgttcccctcaa |
17717055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 34056334 - 34056424
Alignment:
| Q |
24 |
gagaaaattagtaagcatcaacacagaatgagggatcatctacaatctgtcatgaagaaaactacgaattttaagttacctcctctgctagc |
115 |
Q |
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| T |
34056334 |
gagaaaataagcatgcttcaacacataatgagacatcatcaacaatctgtcgttaagaaaacttgga-ttgtaagttacctcctctgctagc |
34056424 |
T |
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