View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_low_28 (Length: 250)
Name: NF16572_low_28
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 11236133 - 11235913
Alignment:
| Q |
10 |
aatggcaacttacggtggccggaaaacaagagagaagggggagatctcaaaaattaaacttctctaatctaaaaataaattgagggcttctatagatgaa |
109 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| || |
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| T |
11236133 |
aatggcaactcacggtggccggaaaacaagagagaagggggagatctcaaaaattaaacttcttcaatctaaaaataaattgagggcttttgtagagaaa |
11236034 |
T |
|
| Q |
110 |
gaagagaggaattcaatggaggtgatggggattttaaagggggccggacgaaagagatatcgtgaccggaag-tggtggtggtggtgaccaaaagaagga |
208 |
Q |
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||||||||||||||||||| |||| ||||||||||||||| ||||||||| || || ||| ||||||||||| |||||||||||||||| |||| || || |
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| T |
11236033 |
gaagagaggaattcaatggtggtggtggggattttaaaggaggccggacggaaaagttatggtgaccggaagttggtggtggtggtgacgaaaa-aatga |
11235935 |
T |
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| Q |
209 |
gaaagaataagaagaaagagtc |
230 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
11235934 |
gaaagaataagaagaaagagtc |
11235913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 34905995 - 34906217
Alignment:
| Q |
3 |
ttttctaaatggcaacttacggtggccggaaaacaagagagaagggggagatctcaaaaattaaacttctctaatctaaaaataaattgagggcttctat |
102 |
Q |
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|||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||| | | |
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| T |
34905995 |
ttttctcaatggcaactcacggtggccgaaaaacaagagagaagggggagatctcgaaaattaaacttctccaatctaaaaaaaaattgatggcttttgt |
34906094 |
T |
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| Q |
103 |
agatgaagaagagaggaattcaatggaggtgatggggattttaaagggggccggacgaaagagatatcgtgaccggaa-gtggtggtggtggtgaccaaa |
201 |
Q |
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| T |
34906095 |
agaggaagaagagaggaattcaatggtgatggaggggattttaaaggaggccggacgaaaaagttatggtgaccggaacttggtggtggtggtgacgaaa |
34906194 |
T |
|
| Q |
202 |
agaaggagaaagaataagaagaa |
224 |
Q |
| |
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| || |||||||||||||||||| |
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| T |
34906195 |
aaaatgagaaagaataagaagaa |
34906217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 23482784 - 23483006
Alignment:
| Q |
10 |
aatggcaacttacggtggccggaaaacaagagagaagggggagatctcaaaaattaaacttctctaatctaaaaataaattgagggcttctatagatgaa |
109 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||| || |
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| T |
23482784 |
aatggcaactcacggtggccggaaaacaagagagaagggg-agatctcaaaaattaaacttcttcaatctaaaaataaattgagggcttttgtagagaaa |
23482882 |
T |
|
| Q |
110 |
gaagagaggaattcaatggaggtgatggggattttaaagggggccggacgaaagagatatcgtgaccggaa----gtggtggtggtggtgaccaaaagaa |
205 |
Q |
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| T |
23482883 |
gaagagaggaattcaatggtggtggtggggattttaaaggaggccagacggaaaagttatggtgactggaagttggtggtggtggtggtgacgaaaa-aa |
23482981 |
T |
|
| Q |
206 |
ggagaaagaataagaagaaagagtc |
230 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
23482982 |
tgagaaagaataagaagaaagagtc |
23483006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23473278 - 23473505
Alignment:
| Q |
1 |
gattttctaaatggcaacttacggtggccggaaaacaagagagaagggggagatctcaaaaattaaacttctctaatctaaaaataaattgagggcttct |
100 |
Q |
| |
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||||||| |||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
23473278 |
gattttcccaatggcaactcacagtggccggaaaacaagagagaagggggaagtctcaaaaattaaacttctccaatctaaaaataaattgagggctttt |
23473377 |
T |
|
| Q |
101 |
atagatgaagaagagaggaattcaatggaggtgatggggattttaaagggggccggacgaaagagatatcgtgaccggaagtggtggtggtggtgaccaa |
200 |
Q |
| |
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|||| ||||||||||||||||||| || |||| ||||||||||||| ||||||||| || || ||| ||||||||| || ||||||||||||| || |
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| T |
23473378 |
gtagaggaagaagagaggaattcaacggtggtggcagggattttaaaggaggccggacggaatagttatggtgaccggaggt--tggtggtggtgacgaa |
23473475 |
T |
|
| Q |
201 |
aagaaggagaaagaataagaagaaagagtc |
230 |
Q |
| |
|
|| || ||||| ||| || ||||||||||| |
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| T |
23473476 |
aaaaatgagaaggaagaataagaaagagtc |
23473505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 52610340 - 52610122
Alignment:
| Q |
3 |
ttttctaaatggcaacttacggtggccggaaaacaagagagaagggggagatctcaaaaattaaacttctctaatctaaaaataaattgagggcttctat |
102 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | | |
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| T |
52610340 |
ttttccaaatggcaactcacggtggccggaaaacaagaaagaagggggagatctcaaaaattaaacttctccaatctataaataaattgagggcttttgt |
52610241 |
T |
|
| Q |
103 |
agatgaagaagagaggaattcaatggaggtgatggggattttaaagggggccggacgaaagagatatcgtgaccggaag-tggtggtggtggtgaccaaa |
201 |
Q |
| |
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||| |||||||||||||||||||||| |||| |||||||||||||| ||||||||| || | ||| |||||||||| |||||||||||||||| ||| |
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| T |
52610240 |
agaggaagaagagaggaattcaatggtggtggcggggattttaaaggaggccggacggaaaatttatgttgaccggaagttggtggtggtggtgacgaaa |
52610141 |
T |
|
| Q |
202 |
agaaggagaaagaataagaa |
221 |
Q |
| |
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| || || |||||||||||| |
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| T |
52610140 |
a-aatgaaaaagaataagaa |
52610122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 22627861 - 22627927
Alignment:
| Q |
61 |
aattaaacttctctaatctaaaaataaattgagggcttctatagatgaagaagagaggaattcaatg |
127 |
Q |
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||||||||||||| |||||| |||||||||| |||||| | |||| ||| ||||||||||| |||| |
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| T |
22627861 |
aattaaacttctccaatctagaaataaattgcgggcttttgtagaggaaagagagaggaatttaatg |
22627927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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