View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_low_29 (Length: 248)
Name: NF16572_low_29
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 13847381 - 13847622
Alignment:
| Q |
6 |
tgagatgaacaaaagaaatcagttttctctgtaacgaagaaaaggactgaaaaacagaagtgatgtaaatatactgattaactgaactatcaaaccttca |
105 |
Q |
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| T |
13847381 |
tgagataaacaaaaaaaatcagttttctctgtaacgaagaaaaggactgaaaaacagaagtgatgtaaatatactgattaactgaactatcaaaccttca |
13847480 |
T |
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| Q |
106 |
catacataattttcttgtagaatcttgaaatatctattaaggcattcaataatgttgagccatgaacgagttgtttcgctgttatcgtttcctgtttggt |
205 |
Q |
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| T |
13847481 |
catacataattttcttttagaatcttgaaatatctattaaggcattcaataatgttgagccatgaaccagttggttcgctgttatcgtttccagtttggt |
13847580 |
T |
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| Q |
206 |
gctcctgaagtaataaaataacatgcaagtggaataagcata |
247 |
Q |
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| T |
13847581 |
gctcctgaagtcataaaataacatgtaagtggagtaagcata |
13847622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 13838738 - 13838965
Alignment:
| Q |
21 |
aaatcagttttctctgtaacgaagaaaaggactgaaaaacagaagtgatgtaaatatactgattaactgaactatcaaaccttcacatacataattttct |
120 |
Q |
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| T |
13838738 |
aaatcagttttctctataacaaagaaaaggactgaaaaacagaagtgatgtaaatgtactgattcactgaattatcaaaccttcacatacataattttct |
13838837 |
T |
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| Q |
121 |
tgtagaatcttgaaatatctattaaggcattcaataatgttgagccatgaacgagttgtttcgctgttatcgtttcctgtttggtgctcctgaagtaata |
220 |
Q |
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| T |
13838838 |
ttcagaatcttgaaatatctattaaggcattcaataatgttgagccatgaacgagttgtttcgctgttatcgtttcctgtttggtgctcctgaagtcata |
13838937 |
T |
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| Q |
221 |
aaataacatgcaagtggaataagcataa |
248 |
Q |
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| T |
13838938 |
aaataacatgtaagtggaataatcataa |
13838965 |
T |
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