View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16572_low_3 (Length: 653)
Name: NF16572_low_3
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 14 - 637
Target Start/End: Complemental strand, 44384487 - 44383872
Alignment:
| Q |
14 |
caaaggcaatattatacggtggtcgagattcaaacatcaaactctttacttctttgtatttaaaatgtgtgattttcagccactgtatcactagattact |
113 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||| |||| | |
|
|
| T |
44384487 |
caaaggcaatattatacaggggttgagattcaaacatcaaactctttacttttttgcatttaaaatgtgtgattttcagccactaaaccactatattatt |
44384388 |
T |
|
| Q |
114 |
tnnnnnnnncttaaaggagataaaaaagttcaacttatatatgaattgtatgaaaatatttaagttgagccatcaactacctacattccaaacaaaatat |
213 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
44384387 |
taaaaaaaacttaaaggagataaaaaagttcaacttat----gaattttatgaaaatatttaagttgagccatcagctac----attccaaacaaaatat |
44384296 |
T |
|
| Q |
214 |
ctcgtatcatttaatgtgtatgaaaaattattgaataaacaaaaacaaaaatagtattcatagtctacagtttacatatctccacgaaagtgacaatata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44384295 |
ctcgtatcatttaatgtgtatgaaaaattattgaataaacaaaaacaaaaatagtattcatagtctacagtttacatatctccacgaaagtgacaatata |
44384196 |
T |
|
| Q |
314 |
tacatgtaagttcgatgacattattaattggtgtcccttctgaagctttggttctcctccaattacccctctacttgagatgtgatcatagactttggga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44384195 |
tacatgtaagttcgatgacattattaattggtgtcccttctgaagctttggttctcctccaattacccctctacttgagatgtgatcatagactttggga |
44384096 |
T |
|
| Q |
414 |
aaatgacaacttatcttaacatttaagactatatggtcccatgttatgtcttttaaccaaactcactaagttaataatgctgatcaaaatagtttatttg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44384095 |
aaatgacaacttatcttaacatttaagactatatggtcccatgttatgtcttttaaccaaactcactaagttaataatgctgatcaaaatagtttatttg |
44383996 |
T |
|
| Q |
514 |
gttccactactgcacttaaaacttattagttaagctatctacatagaatagttctttttggcaaatatatactgttttaagtagttaacaaaagtccaaa |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44383995 |
gttccactactgcacttaaaacttattagttaagctatctacatagaatagttctttttggcaaatatatactgttttaagtagttaacaaaagtccaaa |
44383896 |
T |
|
| Q |
614 |
tttagtgggtgcaaggttaattct |
637 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
44383895 |
tttagtgggtgcaaggttaattct |
44383872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 3712408 - 3712440
Alignment:
| Q |
53 |
aactctttacttctttgtatttaaaatgtgtga |
85 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
3712408 |
aactctttacttctttatatttaaaatgtgtga |
3712440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University