View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_low_30 (Length: 246)
Name: NF16572_low_30
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 9462648 - 9462419
Alignment:
| Q |
1 |
aattacattcattaacttccatttttacaatggtgtcaatgtcgtgtctgtgtcagtgtttcatagtttgatcagtgatgagacttttgtagatatgata |
100 |
Q |
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| T |
9462648 |
aattacgttcattaacttccatttttacaatggtgtcaatgtcgtgtctgtgtcagtgtttcatagtttgattagtgatgagacttttgtagatatgata |
9462549 |
T |
|
| Q |
101 |
gtgttgaatgttgaatttgaactatgccattaattaattatttgcttgaaattaattggttaggtttaactgatttgtaatgttgtagctgatgaagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9462548 |
gtgttgaatgttgaatttgaactatgccattaattaattatttgcttgaaattaattggttaggtttaactgatttgtaatgttgtagctgatgaagaag |
9462449 |
T |
|
| Q |
201 |
atgctaaagaggaaaattcatccagatatt |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
9462448 |
atgctaaagaggaaaattcatccagatatt |
9462419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 10335771 - 10335804
Alignment:
| Q |
33 |
gtgtcaatgtcgtgtctgtgtcagtgtttcatag |
66 |
Q |
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| T |
10335771 |
gtgtcactgtcgtgtctgtgtcagtgtttcatag |
10335804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 33523453 - 33523486
Alignment:
| Q |
33 |
gtgtcaatgtcgtgtctgtgtcagtgtttcatag |
66 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
33523453 |
gtgtcaatgtcgtgtctgtgtcagtgttttatag |
33523486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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