View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16572_low_32 (Length: 241)

Name: NF16572_low_32
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16572_low_32
NF16572_low_32
[»] chr2 (9 HSPs)
chr2 (1-225)||(39401325-39401544)
chr2 (1-35)||(765125-765159)
chr2 (1-43)||(17056025-17056067)
chr2 (1-43)||(17068472-17068514)
chr2 (1-30)||(8033381-8033410)
chr2 (1-34)||(23685639-23685672)
chr2 (1-29)||(9991421-9991449)
chr2 (3-43)||(17074455-17074495)
chr2 (2-34)||(27495224-27495256)
[»] chr4 (8 HSPs)
chr4 (1-41)||(35808365-35808405)
chr4 (1-34)||(55669839-55669872)
chr4 (1-33)||(27839283-27839315)
chr4 (1-35)||(26040335-26040369)
chr4 (4-34)||(41956189-41956219)
chr4 (4-33)||(2362734-2362763)
chr4 (1-34)||(34316698-34316731)
chr4 (1-29)||(16559975-16560003)
[»] chr1 (8 HSPs)
chr1 (1-36)||(34874667-34874702)
chr1 (1-36)||(22346208-22346243)
chr1 (34-113)||(42400930-42401009)
chr1 (1-35)||(7190447-7190481)
chr1 (1-31)||(8772511-8772541)
chr1 (3-33)||(28850884-28850914)
chr1 (1-34)||(41147451-41147484)
chr1 (1-33)||(27209695-27209727)
[»] chr8 (4 HSPs)
chr8 (1-35)||(22488764-22488798)
chr8 (1-34)||(19389286-19389319)
chr8 (1-43)||(18808967-18809009)
chr8 (2-39)||(6939259-6939296)
[»] chr3 (7 HSPs)
chr3 (1-37)||(29915548-29915584)
chr3 (1-37)||(29964701-29964737)
chr3 (34-101)||(377032-377099)
chr3 (2-41)||(47510709-47510748)
chr3 (1-35)||(25102297-25102331)
chr3 (3-33)||(44570363-44570393)
chr3 (1-33)||(4195441-4195473)
[»] chr7 (2 HSPs)
chr7 (1-32)||(40763349-40763380)
chr7 (1-35)||(43567481-43567515)
[»] chr5 (2 HSPs)
chr5 (1-34)||(338740-338773)
chr5 (1-33)||(7736271-7736303)
[»] chr6 (3 HSPs)
chr6 (1-33)||(26572059-26572091)
chr6 (1-33)||(29692318-29692350)
chr6 (1-33)||(32786315-32786347)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39401544 - 39401325
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctccttattttaataaaaaatggtgtgatatccacttaaaaatgaaggttttaagtgagaacttgggtctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39401544 ccaatgccccaagggcaatggttagcattctccttattttaataaaaagtggtgtgatatccacttaaaaatgaaggttttaagtgagaccttgggtctt 39401445  T
Q  101 agaaaacccccaannnnnnnnnctcctaataagacacctattaagtaccgagtcttaaatggttgacnnnnnnngtgtggtctcatgttcctttgttgag 200  Q
    ||||||  | |||          || |||||||| ||||||||| |||||||||| ||||| |||||           ||||||||||||||||||||||    
T  39401444 agaaaa--ctcaaaaaaaaaaattcttaataagatacctattaaataccgagtctcaaatgattgacaaaaaaa---aggtctcatgttcctttgttgag 39401350  T
Q  201 gtagaatataaagcaattaccaatg 225  Q
    |||||||||||||||||||||||||    
T  39401349 gtagaatataaagcaattaccaatg 39401325  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 765159 - 765125
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcctt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  765159 ccaatgccccaagggcaatggttagcattctcctt 765125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17056067 - 17056025
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctccttattttaat 43  Q
    ||||||||| ||||||||||||||||||||||||  |||||||    
T  17056067 ccaatgccctaagggcaatggttagcattctcctatttttaat 17056025  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17068514 - 17068472
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctccttattttaat 43  Q
    ||||||||| ||||||||||||||||||||||||  |||||||    
T  17068514 ccaatgccctaagggcaatggttagcattctcctatttttaat 17068472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 8033381 - 8033410
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattc 30  Q
    ||||||||||||||||||||||||||||||    
T  8033381 ccaatgccccaagggcaatggttagcattc 8033410  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23685672 - 23685639
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  23685672 ccaatgccccaagggcaatggttaacattctcct 23685639  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9991449 - 9991421
Alignment:
Q  1 ccaatgccccaagggcaatggttagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  9991449 ccaatgccccaagggcaatggttagcatt 9991421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 17074495 - 17074455
Alignment:
Q  3 aatgccccaagggcaatggttagcattctccttattttaat 43  Q
    ||||||| ||||||||||||||||||||||||  |||||||    
T  17074495 aatgccctaagggcaatggttagcattctcctatttttaat 17074455  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 27495224 - 27495256
Alignment:
Q  2 caatgccccaagggcaatggttagcattctcct 34  Q
    |||||||||||| ||||||||||||||||||||    
T  27495224 caatgccccaagtgcaatggttagcattctcct 27495256  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35808405 - 35808365
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctccttatttta 41  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  35808405 ccaatgccccaagggcaatggttagcattctccttttttta 35808365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 55669839 - 55669872
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcct 34  Q
    ||||||||||||||||||||||||||||||||||    
T  55669839 ccaatgccccaagggcaatggttagcattctcct 55669872  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27839315 - 27839283
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcc 33  Q
    |||||||||||||||||||||||||||||||||    
T  27839315 ccaatgccccaagggcaatggttagcattctcc 27839283  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26040369 - 26040335
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcctt 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  26040369 ccaatgccccaaggacaatggttagcattctcctt 26040335  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 41956219 - 41956189
Alignment:
Q  4 atgccccaagggcaatggttagcattctcct 34  Q
    |||||||||||||||||||||||||||||||    
T  41956219 atgccccaagggcaatggttagcattctcct 41956189  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 2362734 - 2362763
Alignment:
Q  4 atgccccaagggcaatggttagcattctcc 33  Q
    ||||||||||||||||||||||||||||||    
T  2362734 atgccccaagggcaatggttagcattctcc 2362763  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 34316731 - 34316698
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcct 34  Q
    |||||||||||||||||||||| |||||||||||    
T  34316731 ccaatgccccaagggcaatggtgagcattctcct 34316698  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16560003 - 16559975
Alignment:
Q  1 ccaatgccccaagggcaatggttagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  16560003 ccaatgccccaagggcaatggttagcatt 16559975  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34874667 - 34874702
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcctta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  34874667 ccaatgccccaagggcaatggttagcattctcctta 34874702  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22346243 - 22346208
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcctta 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  22346243 ccaaagccccaagggcaatggttagcattctcctta 22346208  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 42401009 - 42400930
Alignment:
Q  34 ttattttaataaaaaatggtgtgatatccacttaaaaatgaaggttttaagtgagaacttgggtcttagaaaacccccaa 113  Q
    ||||||||||||||| | |||||   ||||||||| ||| | ||| |||||||||| | |||||||||||| ||||||||    
T  42401009 ttattttaataaaaagtagtgtggggtccacttaagaataagggtcttaagtgagaccctgggtcttagaagacccccaa 42400930  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7190481 - 7190447
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcctt 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  7190481 ccaatgccccaagggcaaaggttagcattctcctt 7190447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8772511 - 8772541
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattct 31  Q
    |||||||||||||||||||||||||||||||    
T  8772511 ccaatgccccaagggcaatggttagcattct 8772541  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 28850914 - 28850884
Alignment:
Q  3 aatgccccaagggcaatggttagcattctcc 33  Q
    |||||||||||||||||||||||||||||||    
T  28850914 aatgccccaagggcaatggttagcattctcc 28850884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41147484 - 41147451
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcct 34  Q
    |||||||||||||| |||||||||||||||||||    
T  41147484 ccaatgccccaaggacaatggttagcattctcct 41147451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27209727 - 27209695
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcc 33  Q
    |||||||||||||| ||||||||||||||||||    
T  27209727 ccaatgccccaaggacaatggttagcattctcc 27209695  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22488798 - 22488764
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcctt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  22488798 ccaatgccccaagggcaatggttagcattctcctt 22488764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 19389319 - 19389286
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcct 34  Q
    ||||||||||||||||||||||||||||||||||    
T  19389319 ccaatgccccaagggcaatggttagcattctcct 19389286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18808967 - 18809009
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctccttattttaat 43  Q
    |||||||||||||||||||||||| |||| ||||| |||||||    
T  18808967 ccaatgccccaagggcaatggttaacattatccttcttttaat 18809009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 6939259 - 6939296
Alignment:
Q  2 caatgccccaagggcaatggttagcattctccttattt 39  Q
    |||||||||| || ||||||||||||||||||||||||    
T  6939259 caatgccccatggacaatggttagcattctccttattt 6939296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29915584 - 29915548
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctccttat 37  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29915584 ccaacgccccaagggcaatggttagcattctccttat 29915548  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29964737 - 29964701
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctccttat 37  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29964737 ccaacgccccaagggcaatggttagcattctccttat 29964701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 377099 - 377032
Alignment:
Q  34 ttattttaataaaaaatggtgtgatatccacttaaaaatgaaggttttaagtgagaacttgggtctta 101  Q
    |||||||| |||||| ||||||||  ||||||||| |||||  || |||||||||| |||||||||||    
T  377099 ttattttattaaaaagtggtgtgaggtccacttaagaatgagagtcttaagtgagaccttgggtctta 377032  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 47510748 - 47510709
Alignment:
Q  2 caatgccccaagggcaatggttagcattctccttatttta 41  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  47510748 caatgccccaaaggtaatggttagcattctccttatttta 47510709  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25102331 - 25102297
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcctt 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  25102331 ccaatgtcccaagggcaatggttagcattctcctt 25102297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 44570393 - 44570363
Alignment:
Q  3 aatgccccaagggcaatggttagcattctcc 33  Q
    |||||||||||||||||||||||||||||||    
T  44570393 aatgccccaagggcaatggttagcattctcc 44570363  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4195441 - 4195473
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcc 33  Q
    ||||||||||||| |||||||||||||||||||    
T  4195441 ccaatgccccaagagcaatggttagcattctcc 4195473  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40763349 - 40763380
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctc 32  Q
    ||||||||||||||||||||||||||||||||    
T  40763349 ccaatgccccaagggcaatggttagcattctc 40763380  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43567515 - 43567481
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcctt 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  43567515 ccaatgccccaagggcaatggttagcaatctcctt 43567481  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 338773 - 338740
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcct 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  338773 ccaatgccccaagggcaatggttaggattctcct 338740  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7736303 - 7736271
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcc 33  Q
    |||||| ||||||||||||||||||||||||||    
T  7736303 ccaatgtcccaagggcaatggttagcattctcc 7736271  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26572091 - 26572059
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcc 33  Q
    |||||||||||||| ||||||||||||||||||    
T  26572091 ccaatgccccaaggacaatggttagcattctcc 26572059  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29692350 - 29692318
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcc 33  Q
    |||||||||||||||||||| ||||||||||||    
T  29692350 ccaatgccccaagggcaatgattagcattctcc 29692318  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32786315 - 32786347
Alignment:
Q  1 ccaatgccccaagggcaatggttagcattctcc 33  Q
    ||||| |||||||||||||||||||||||||||    
T  32786315 ccaataccccaagggcaatggttagcattctcc 32786347  T

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