View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16572_low_35 (Length: 227)

Name: NF16572_low_35
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16572_low_35
NF16572_low_35
[»] chr5 (5 HSPs)
chr5 (1-227)||(40898404-40898630)
chr5 (88-132)||(39030569-39030613)
chr5 (87-133)||(34252722-34252768)
chr5 (84-129)||(42324943-42324988)
chr5 (73-129)||(26730117-26730173)
[»] chr2 (8 HSPs)
chr2 (87-133)||(10459271-10459317)
chr2 (87-132)||(31469076-31469121)
chr2 (87-131)||(33829394-33829438)
chr2 (87-133)||(17437185-17437231)
chr2 (94-132)||(35693930-35693968)
chr2 (88-133)||(2884262-2884307)
chr2 (80-133)||(16180494-16180547)
chr2 (73-133)||(7932734-7932794)
[»] chr8 (2 HSPs)
chr8 (88-133)||(9548108-9548153)
chr8 (84-133)||(29111018-29111067)
[»] chr1 (4 HSPs)
chr1 (88-133)||(47543605-47543650)
chr1 (88-132)||(3739874-3739918)
chr1 (87-129)||(35310315-35310357)
chr1 (87-131)||(3739819-3739863)
[»] scaffold0093 (1 HSPs)
scaffold0093 (78-126)||(21594-21642)
[»] chr7 (2 HSPs)
chr7 (82-133)||(44816467-44816518)
chr7 (92-132)||(16866461-16866501)
[»] chr4 (5 HSPs)
chr4 (88-133)||(30848651-30848696)
chr4 (87-132)||(55827301-55827346)
chr4 (84-128)||(23151594-23151638)
chr4 (84-128)||(24980689-24980733)
chr4 (89-133)||(54235281-54235325)
[»] chr3 (1 HSPs)
chr3 (88-129)||(46829105-46829146)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40898404 - 40898630
Alignment:
Q  1 ttggtaatgataagagctataccttattcacatcacaatctactaaaatgtgttaagcataagttaagttcatattttctccatctcaaaatataatcaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40898404 ttggtaatgataagagctataccttattcacatcacaatctactaaaatgtgttaagcataagttaagttcatactttctccatctcaaaatataatcaa 40898503  T
Q  101 aaattggtcaacaaaaattattgtatttggttcgaaaaaacgatgttttggagtaacgttatggttagcagataaggatgtgattgaattcatccaggat 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40898504 aaattggtcaataaaaattattgtatttggttcgaaaaaacgatgttttggagtaacgttatgattagcagataaggatgtgattgaattcatccaggat 40898603  T
Q  201 gtcccgagcattctacacaagtgtgat 227  Q
    |||||  ||||||||||||||||||||    
T  40898604 gtccctggcattctacacaagtgtgat 40898630  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 39030569 - 39030613
Alignment:
Q  88 aaaatataatcaaaaattggtcaacaaaaattattgtatttggtt 132  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||    
T  39030569 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggtt 39030613  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 34252722 - 34252768
Alignment:
Q  87 caaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    |||||| ||| ||||||||||||||||||| ||| ||||||||||||    
T  34252722 caaaatgtaagcaaaaattggtcaacaaaagttaatgtatttggttc 34252768  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 42324988 - 42324943
Alignment:
Q  84 tctcaaaatataatcaaaaattggtcaacaaaaattattgtatttg 129  Q
    |||||||||||||  |||||||||||||||||| ||| ||||||||    
T  42324988 tctcaaaatataagtaaaaattggtcaacaaaagttaatgtatttg 42324943  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 26730173 - 26730117
Alignment:
Q  73 tattttctccatctcaaaatataatcaaaaattggtcaacaaaaattattgtatttg 129  Q
    |||||||||||||| ||||||||   |||||||||| ||||||| ||| ||||||||    
T  26730173 tattttctccatcttaaaatatagataaaaattggttaacaaaagttaatgtatttg 26730117  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 10459271 - 10459317
Alignment:
Q  87 caaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  10459271 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggttc 10459317  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 31469076 - 31469121
Alignment:
Q  87 caaaatataatcaaaaattggtcaacaaaaattattgtatttggtt 132  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||    
T  31469076 caaaatataagcaaaaattggtcaacaaaagttaatgtatttggtt 31469121  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 33829394 - 33829438
Alignment:
Q  87 caaaatataatcaaaaattggtcaacaaaaattattgtatttggt 131  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||    
T  33829394 caaaatataaacaaaaattggtcaacaaaaattaatatatttggt 33829438  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 17437231 - 17437185
Alignment:
Q  87 caaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    |||||||||| |||||||| |||||||||||||| ||||||| ||||    
T  17437231 caaaatataaacaaaaatttgtcaacaaaaattaatgtatttagttc 17437185  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 35693930 - 35693968
Alignment:
Q  94 taatcaaaaattggtcaacaaaaattattgtatttggtt 132  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  35693930 taatcaaaaattggtcaataaaaattaatgtatttggtt 35693968  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 2884262 - 2884307
Alignment:
Q  88 aaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    |||||||||  ||||||| |||||||||||||| ||||||||||||    
T  2884262 aaaatataagtaaaaatttgtcaacaaaaattaatgtatttggttc 2884307  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 16180547 - 16180494
Alignment:
Q  80 tccatctcaaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    |||||| ||||||||||  |||| ||||||||||||| ||| ||||||||||||    
T  16180547 tccatcccaaaatataagtaaaatttggtcaacaaaagttaatgtatttggttc 16180494  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 7932734 - 7932794
Alignment:
Q  73 tattttctccatctcaaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    |||||||| | ||| ||||||||| |||||||| |||||||||| |||  |||||||||||    
T  7932734 tattttcttcgtcttaaaatataagcaaaaattagtcaacaaaagttaacgtatttggttc 7932794  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 9548153 - 9548108
Alignment:
Q  88 aaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  9548153 aaaatataaacaaaaattgttcaacaaaaattattatatttggttc 9548108  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 29111067 - 29111018
Alignment:
Q  84 tctcaaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    ||||||||||||| ||||||||| ||||| ||| ||| ||||||||||||    
T  29111067 tctcaaaatataaacaaaaattgatcaacgaaacttaatgtatttggttc 29111018  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 47543605 - 47543650
Alignment:
Q  88 aaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    |||||||||| |||||||||||||||||||||| || |||||||||    
T  47543605 aaaatataataaaaaattggtcaacaaaaattaatgaatttggttc 47543650  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 3739918 - 3739874
Alignment:
Q  88 aaaatataatcaaaaattggtcaacaaaaattattgtatttggtt 132  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||||    
T  3739918 aaaatataagcaaaaattggtcaacaaaagttaatgtatttggtt 3739874  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 35310357 - 35310315
Alignment:
Q  87 caaaatataatcaaaaattggtcaacaaaaattattgtatttg 129  Q
    ||||||||||  |||||||||||||||||||||| ||||||||    
T  35310357 caaaatataagtaaaaattggtcaacaaaaattaatgtatttg 35310315  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 3739819 - 3739863
Alignment:
Q  87 caaaatataatcaaaaattggtcaacaaaaattattgtatttggt 131  Q
    |||||||||| ||||||||||||||| ||| ||| ||||||||||    
T  3739819 caaaatataagcaaaaattggtcaacgaaagttaatgtatttggt 3739863  T

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Target: scaffold0093 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 21642 - 21594
Alignment:
Q  78 tctccatctcaaaatataatcaaaaattggtcaacaaaaattattgtat 126  Q
    ||||||||| ||||||||| |||||| |||||||||||||||| |||||    
T  21642 tctccatcttaaaatataaacaaaaagtggtcaacaaaaattaatgtat 21594  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 44816467 - 44816518
Alignment:
Q  82 catctcaaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    ||||||||||| ||| |||||||||| |||||||| ||| ||||||||||||    
T  44816467 catctcaaaatgtaaacaaaaattggccaacaaaagttaatgtatttggttc 44816518  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 16866501 - 16866461
Alignment:
Q  92 tataatcaaaaattggtcaacaaaaattattgtatttggtt 132  Q
    ||||| ||||||||||||||||||| ||| |||||||||||    
T  16866501 tataagcaaaaattggtcaacaaaagttaatgtatttggtt 16866461  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 30848696 - 30848651
Alignment:
Q  88 aaaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    ||||| ||| ||||||||||||||||||||||| ||||||| ||||    
T  30848696 aaaatgtaagcaaaaattggtcaacaaaaattaatgtattttgttc 30848651  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 55827346 - 55827301
Alignment:
Q  87 caaaatataatcaaaaattggtcaacaaaaattattgtatttggtt 132  Q
    |||||||||| ||||||||||||||||||| ||| | |||||||||    
T  55827346 caaaatataagcaaaaattggtcaacaaaagttaatatatttggtt 55827301  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 23151638 - 23151594
Alignment:
Q  84 tctcaaaatataatcaaaaattggtcaacaaaaattattgtattt 128  Q
    |||||||||||||  |||||||| ||||||||||||| |||||||    
T  23151638 tctcaaaatataaagaaaaattgatcaacaaaaattaatgtattt 23151594  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 24980733 - 24980689
Alignment:
Q  84 tctcaaaatataatcaaaaattggtcaacaaaaattattgtattt 128  Q
    ||||||||| ||| |||||||| |||||||||||||| |||||||    
T  24980733 tctcaaaatgtaagcaaaaatttgtcaacaaaaattaatgtattt 24980689  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 54235325 - 54235281
Alignment:
Q  89 aaatataatcaaaaattggtcaacaaaaattattgtatttggttc 133  Q
    |||||||| ||||||||| ||||||||| ||| ||||||||||||    
T  54235325 aaatataaacaaaaattgctcaacaaaagttaatgtatttggttc 54235281  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 46829146 - 46829105
Alignment:
Q  88 aaaatataatcaaaaattggtcaacaaaaattattgtatttg 129  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||    
T  46829146 aaaatataagcaaaaattggtcaacaaaagttaatgtatttg 46829105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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