View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16572_low_4 (Length: 620)

Name: NF16572_low_4
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16572_low_4
NF16572_low_4
[»] chr8 (6 HSPs)
chr8 (405-605)||(18106723-18106922)
chr8 (132-261)||(18106379-18106508)
chr8 (138-261)||(18097267-18097390)
chr8 (138-261)||(18138863-18138986)
chr8 (257-408)||(18106531-18106703)
chr8 (557-610)||(13025852-13025905)
[»] chr4 (3 HSPs)
chr4 (310-350)||(37876140-37876180)
chr4 (262-311)||(37876069-37876119)
chr4 (141-183)||(37875943-37875985)
[»] chr2 (3 HSPs)
chr2 (310-350)||(23895501-23895541)
chr2 (262-311)||(23895562-23895612)
chr2 (141-183)||(23895696-23895738)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 405 - 605
Target Start/End: Original strand, 18106723 - 18106922
Alignment:
Q  405 gatagactggtttggtgtattaggtgtgggtagcagaattggattattgtttgcttatgcacaatagacttgnnnnnnnacttattacttctagcctgat 504  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||       |||||||| ||||||||| ||    
T  18106723 gatagactggtttggtgtattaggtgtgggtaactgaattggattattgcttgcttatgcacaatagacttgtttttt-acttattatttctagcctaat 18106821  T
Q  505 catagtataccttgtgtaagtcatttgcaagaataaattggagtaaatgccagagatttaatgttagatgaactcaattataggtttcattccggtctgt 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18106822 catagtataccttgtgtaagtcatttgcaagaataaattggagtaaataccagagatttaatgttagatgaactcaattataggtttcatttcggtctgt 18106921  T

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Target: chr8; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 132 - 261
Target Start/End: Original strand, 18106379 - 18106508
Alignment:
Q  132 aaccctattaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttata 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18106379 aaccctattaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttata 18106478  T
Q  232 gaattgttttgttgcttcagaatgatgatt 261  Q
    ||||||||||||||||||||||||||||||    
T  18106479 gaattgttttgttgcttcagaatgatgatt 18106508  T

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Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 138 - 261
Target Start/End: Original strand, 18097267 - 18097390
Alignment:
Q  138 attaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttatagaattg 237  Q
    ||||||||||||||||||||||||| |||||||||||| |||| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  18097267 attaataattagttttaagccattcaggcatgttgtgcttagactgtgccacttgatcaatgcatgtgaatttggttgttagaagtcagttatagaattg 18097366  T
Q  238 ttttgttgcttcagaatgatgatt 261  Q
    ||||||||||||||||||| ||||    
T  18097367 ttttgttgcttcagaatgacgatt 18097390  T

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Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 18138986 - 18138863
Alignment:
Q  138 attaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttatagaattg 237  Q
    |||| |||||||||||||||||||| |||||||||||| |||||| |||||| |||||| || |||||| |||||||||||||||||||||||| |||||    
T  18138986 attagtaattagttttaagccattcaggcatgttgtgcttagagtgtgccacttgatcaatgaatgtgagtttggttgttagaagtcagttataaaattg 18138887  T
Q  238 ttttgttgcttcagaatgatgatt 261  Q
    ||||||||||||||||||| ||||    
T  18138886 ttttgttgcttcagaatgacgatt 18138863  T

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Target: chr8; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 257 - 408
Target Start/End: Original strand, 18106531 - 18106703
Alignment:
Q  257 tgattggtatggtattgttttgttgcttcatgcttagttagttctatcttttgt---------------------tagtagtgttattattttggtgata 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||| |||||||||||| ||||    
T  18106531 tgattggtatggtattgttttgttgcttcatgcttagttagttctatcttttgtcgtagacggccttgatattgttagtagtattattattttggcgata 18106630  T
Q  336 cacatatttgactgcattatttctacaaaattgaagctttatctttgttagaatatatcaatgaagaaagata 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||    
T  18106631 cacatatttgactgcattatttctacaaaattgaagctttatcttagttagaatatatcacagaaaaaagata 18106703  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 610
Target Start/End: Original strand, 13025852 - 13025905
Alignment:
Q  557 gagatttaatgttagatgaactcaattataggtttcattccggtctgtgctcct 610  Q
    ||||||| || |||||||||||| |||||||||||||||| || ||||| ||||    
T  13025852 gagatttgattttagatgaactcgattataggtttcattcgggcctgtgttcct 13025905  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 37876140 - 37876180
Alignment:
Q  310 ttagtagtgttattattttggtgatacacatatttgactgc 350  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  37876140 ttagtagtgttattattttggttatacacatatttgactgc 37876180  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 37876069 - 37876119
Alignment:
Q  262 ggtatggtattgttttgtt-gcttcatgcttagttagttctatcttttgtt 311  Q
    |||||||||||| ||| || |||||||||||||||||||||||||||||||    
T  37876069 ggtatggtattggtttatttgcttcatgcttagttagttctatcttttgtt 37876119  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 37875943 - 37875985
Alignment:
Q  141 aataattagttttaagccattcgggcatgttgtgcctagagta 183  Q
    |||||||||||||||||||||| ||||||||| || |||||||    
T  37875943 aataattagttttaagccattcaggcatgttgcgcttagagta 37875985  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 23895541 - 23895501
Alignment:
Q  310 ttagtagtgttattattttggtgatacacatatttgactgc 350  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  23895541 ttagtagtgttattattttggttatacacatatttgactgc 23895501  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 23895612 - 23895562
Alignment:
Q  262 ggtatggtattgttttgtt-gcttcatgcttagttagttctatcttttgtt 311  Q
    |||||||||||| ||| || |||||||||||||||||||||||||||||||    
T  23895612 ggtatggtattggtttatttgcttcatgcttagttagttctatcttttgtt 23895562  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 23895738 - 23895696
Alignment:
Q  141 aataattagttttaagccattcgggcatgttgtgcctagagta 183  Q
    |||||||||||||||||||||| ||||||||| || |||||||    
T  23895738 aataattagttttaagccattcaggcatgttgcgcttagagta 23895696  T

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