View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_low_5 (Length: 574)
Name: NF16572_low_5
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 435 - 555
Target Start/End: Complemental strand, 8446601 - 8446481
Alignment:
| Q |
435 |
atgtgcccaatttagaaatctctacctcgtcccttagaatttctcttagctccataaaaaccaaacatgacaagaacaaccatcctcaaattcctcacaa |
534 |
Q |
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| T |
8446601 |
atgtgcccaatttagaaatctctacctcgtcccttagaatttctcttagctccataaaaaccaaacatgacaagaacaaccatcctcaaattcctcacaa |
8446502 |
T |
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| Q |
535 |
tagttgctcttatagcttatt |
555 |
Q |
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| T |
8446501 |
tagttgctcttatagcttatt |
8446481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 8447233 - 8447102
Alignment:
| Q |
1 |
aatggtaaaatatcttgtcttctgggttgtgggagtttttgaattatataatacaaatttcataaaaacatttgagactgtataataagaacatgggtaa |
100 |
Q |
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| T |
8447233 |
aatggtaaaatatcttgtcttctgggttgtgggagtttttgaattatataatacaaatttcataaaaacatttgagactatataatatgaacatgggtaa |
8447134 |
T |
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| Q |
101 |
aataggaaaaatggacggggtgcaagaaaacag |
133 |
Q |
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| T |
8447133 |
aataggaaaaatgaac-gggtgcgagaaaacag |
8447102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 8447006 - 8446882
Alignment:
| Q |
201 |
tatcgaatataaataaaggaaaaaaggtgtgacacatgcttacttttcgtcatttcataactgatttaacaaattcttaaatcaaatttttctggtgtca |
300 |
Q |
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| T |
8447006 |
tatcgaat-taaataaaggaaaaaaggtgttacacatgcttacttttcctcatttcataactgatttaacgaattcttaaatcaaacttttctggtgtta |
8446908 |
T |
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| Q |
301 |
cacatgctcacttttctttactttat |
326 |
Q |
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| T |
8446907 |
cacatgctcacttttctttactttat |
8446882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 8446699 - 8446667
Alignment:
| Q |
337 |
atcaaccactttattatataaggcttacttgac |
369 |
Q |
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| T |
8446699 |
atcaaccactttattatataaggcttacttgac |
8446667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 8447077 - 8447031
Alignment:
| Q |
157 |
aaaacgacatacattcatttaaattgataaagaatgtaacaccctat |
203 |
Q |
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| T |
8447077 |
aaaaggacatacattcatttaaattgataaagtatgtaccatcctat |
8447031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 29916059 - 29916114
Alignment:
| Q |
205 |
gaatataaataaaggaaaaaaggtgtgacacatgcttacttttcgtcatttcataa |
260 |
Q |
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||||||||||||||||||| |||||| ||| || || ||||||||||||||||||| |
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| T |
29916059 |
gaatataaataaaggaaaataggtgttacatatactcacttttcgtcatttcataa |
29916114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 14175790 - 14175847
Alignment:
| Q |
203 |
tcgaatataaataaaggaaaaaaggtgtgacacatgcttacttttcgtcatttcataa |
260 |
Q |
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||||||| ||||||||||||| | |||| ||||||||||| ||||| |||| |||||| |
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| T |
14175790 |
tcgaataaaaataaaggaaaataagtgttacacatgcttaattttcatcatctcataa |
14175847 |
T |
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