View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16572_low_9 (Length: 472)
Name: NF16572_low_9
Description: NF16572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16572_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 33676189 - 33675743
Alignment:
| Q |
18 |
acagattgtcattaaattttggctggcacagacaaaattcaattaataagccagattcaactattactaataatagtgtaattagaaaaatgatagatag |
117 |
Q |
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| T |
33676189 |
acagattgtcattaaattttggctggcacagacaaaattcaattaataagccagattcaactattactaataatagtgtaattagaaaaatgatagatag |
33676090 |
T |
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| Q |
118 |
agttaccaaaaacataatgatagatataaaatgaaagcaggttgtgaactgtccccaaaccgcggtctatctttaaatggaagaaaaggctggtacaaat |
217 |
Q |
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| T |
33676089 |
agttaccaaaaacataatgatagatataaaatgaaagcaggttgtgaactgtcccaaaaccgcggtctatctttaaatggaagaaaaggctggtacaaat |
33675990 |
T |
|
| Q |
218 |
cttaagaatgaccatctaatgaaaaacaatgttatcctaataagataagcagctcaagtgtttcctttttaaacagtctgcatttgcatgtgtttggaaa |
317 |
Q |
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| T |
33675989 |
cttaagaatgaccatctaatgaaaaacaatgttatcctaataagataagcagctcaagtgtttcc-ttttaaagagtctgcatttgcatgtgtttggaaa |
33675891 |
T |
|
| Q |
318 |
aacaatcatgtgataaccgataacctaatcatagtggtgcctcttttaaacgtactttgtttaataaacaagggctggtagaattatcctcaaaattcca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675890 |
aacaatcatgtgataaccgataacctaatcatagtggtgcctcttttaaacgtactttgtttaataaacaagggctggtagaattatcctcaaaattcca |
33675791 |
T |
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| Q |
418 |
taaagaaacagcagcagaatgtatgaataggaggtgacacaggttctg |
465 |
Q |
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| T |
33675790 |
taaagaaacagcagcagaatgtatgaataggaggtgacactggttctg |
33675743 |
T |
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