View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16573_high_12 (Length: 446)

Name: NF16573_high_12
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16573_high_12
NF16573_high_12
[»] chr7 (9 HSPs)
chr7 (135-286)||(13077530-13077681)
chr7 (136-286)||(13078591-13078741)
chr7 (288-439)||(6081262-6081413)
chr7 (288-439)||(6082469-6082620)
chr7 (27-135)||(30087872-30087980)
chr7 (288-400)||(17901159-17901273)
chr7 (294-401)||(27021363-27021468)
chr7 (90-135)||(30091852-30091898)
chr7 (339-400)||(30640722-30640782)
[»] chr6 (8 HSPs)
chr6 (288-439)||(18132989-18133140)
chr6 (288-439)||(21535769-21535920)
chr6 (288-439)||(18131783-18131934)
chr6 (288-439)||(21395592-21395743)
chr6 (289-393)||(7033339-7033443)
chr6 (141-267)||(28889748-28889874)
chr6 (288-400)||(4303040-4303152)
chr6 (288-394)||(16189671-16189779)
[»] chr3 (15 HSPs)
chr3 (135-286)||(39984803-39984954)
chr3 (135-286)||(39983742-39983893)
chr3 (288-439)||(54994670-54994821)
chr3 (288-439)||(45826153-45826304)
chr3 (288-439)||(7197777-7197928)
chr3 (290-439)||(592562-592711)
chr3 (136-285)||(41968188-41968336)
chr3 (288-439)||(48637539-48637690)
chr3 (288-439)||(2386293-2386452)
chr3 (288-439)||(40976843-40977001)
chr3 (315-439)||(51274447-51274571)
chr3 (140-246)||(14414236-14414340)
chr3 (340-400)||(16772790-16772848)
chr3 (339-399)||(49987228-49987286)
chr3 (370-398)||(54886899-54886927)
[»] chr2 (14 HSPs)
chr2 (135-286)||(14684556-14684707)
chr2 (135-286)||(21306412-21306563)
chr2 (136-286)||(14685617-14685767)
chr2 (136-286)||(30246458-30246608)
chr2 (135-286)||(40421380-40421531)
chr2 (136-286)||(4517243-4517393)
chr2 (136-286)||(21307469-21307619)
chr2 (136-286)||(40422439-40422589)
chr2 (288-439)||(33789940-33790094)
chr2 (288-439)||(12324914-12325068)
chr2 (362-415)||(18955452-18955505)
chr2 (339-399)||(13218743-13218802)
chr2 (371-415)||(3302449-3302494)
chr2 (339-395)||(42599698-42599753)
[»] chr1 (19 HSPs)
chr1 (135-286)||(8090040-8090191)
chr1 (288-439)||(8089720-8089871)
chr1 (288-439)||(8788534-8788685)
chr1 (288-439)||(10582761-10582912)
chr1 (288-439)||(10583967-10584118)
chr1 (288-439)||(49122189-49122340)
chr1 (136-286)||(27962617-27962767)
chr1 (136-286)||(48907301-48907451)
chr1 (156-285)||(172880-173009)
chr1 (288-439)||(49123323-49123474)
chr1 (315-439)||(49122000-49122124)
chr1 (289-403)||(23540880-23540998)
chr1 (316-427)||(23540999-23541112)
chr1 (288-400)||(3815222-3815335)
chr1 (328-392)||(19950378-19950442)
chr1 (288-400)||(36346541-36346653)
chr1 (350-399)||(17826222-17826271)
chr1 (337-399)||(30038108-30038170)
chr1 (358-400)||(40670604-40670646)
[»] chr8 (12 HSPs)
chr8 (136-286)||(45036163-45036313)
chr8 (136-286)||(6540576-6540728)
chr8 (136-286)||(13255565-13255714)
chr8 (288-439)||(40254466-40254615)
chr8 (291-399)||(21661182-21661290)
chr8 (288-415)||(2411062-2411187)
chr8 (288-362)||(26246969-26247043)
chr8 (337-399)||(5176597-5176658)
chr8 (337-395)||(26187541-26187599)
chr8 (315-415)||(13260936-13261037)
chr8 (366-398)||(19729212-19729244)
chr8 (340-400)||(43506411-43506470)
[»] scaffold0026 (2 HSPs)
scaffold0026 (288-438)||(80779-80929)
scaffold0026 (293-439)||(79582-79728)
[»] chr4 (9 HSPs)
chr4 (135-285)||(54938828-54938978)
chr4 (288-439)||(11962091-11962242)
chr4 (136-256)||(54937788-54937908)
chr4 (288-421)||(3567045-3567178)
chr4 (372-439)||(45638746-45638813)
chr4 (340-403)||(27869371-27869434)
chr4 (303-345)||(45638710-45638752)
chr4 (337-399)||(32992387-32992448)
chr4 (337-387)||(36982313-36982362)
[»] scaffold0011 (2 HSPs)
scaffold0011 (288-439)||(211667-211818)
scaffold0011 (288-439)||(205590-205741)
[»] chr5 (11 HSPs)
chr5 (288-439)||(22950324-22950475)
chr5 (288-439)||(39701589-39701740)
chr5 (288-439)||(39702819-39702970)
chr5 (288-439)||(29526039-29526191)
chr5 (288-439)||(19934617-19934768)
chr5 (288-439)||(29527252-29527404)
chr5 (288-397)||(19139374-19139483)
chr5 (288-439)||(41050926-41051080)
chr5 (159-264)||(5033188-5033290)
chr5 (288-400)||(35144500-35144613)
chr5 (371-400)||(37473631-37473660)
[»] scaffold0227 (2 HSPs)
scaffold0227 (288-439)||(11137-11288)
scaffold0227 (288-439)||(12285-12436)
[»] scaffold0018 (1 HSPs)
scaffold0018 (313-439)||(177889-178015)
[»] scaffold0063 (1 HSPs)
scaffold0063 (368-399)||(33903-33934)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 135 - 286
Target Start/End: Complemental strand, 13077681 - 13077530
Alignment:
Q  135 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13077681 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 13077582  T
Q  235 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13077581 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13077530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 13078741 - 13078591
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  13078741 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacggaataatattgcagaacttcgagggtctgcacctccctattgcca 13078642  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13078641 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13078591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 6081413 - 6081262
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  6081413 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 6081314  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6081313 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttc 6081262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 6082620 - 6082469
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  6082620 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 6082521  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6082520 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttc 6082469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 30087980 - 30087872
Alignment:
Q  27 tgttatttttattgttttttatatagacaaatagtaacaaattatgttagtttcttggttagtactctcagcttactatcgagttgtctgcttcggactt 126  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30087980 tgttatttttattgttttttacatagacaaatagtaacaaattatgttagtttcttggttagtactctcagcttactatcgagttgtttgcttcggactt 30087881  T
Q  127 caggtaact 135  Q
    |||||||||    
T  30087880 caggtaact 30087872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 288 - 400
Target Start/End: Complemental strand, 17901273 - 17901159
Alignment:
Q  288 gataggaactgatatcaaaa--tataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgaga 385  Q
    ||||| ||||||||||||||  |||||| ||||||||| ||||||||| | ||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  17901273 gatagaaactgatatcaaaacatataaattaatagtaatattacaatagattcccaagaaattcgagagtcttggtactctcccctccaagaattcgaga 17901174  T
Q  386 gcttggtctctccct 400  Q
    |||||||||||||||    
T  17901173 gcttggtctctccct 17901159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 401
Target Start/End: Complemental strand, 27021468 - 27021363
Alignment:
Q  294 aactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtc 393  Q
    ||||||||||||||||| |  ||||||||| ||||||||| |||||||||||||||  ||| | |||||| |||| || |||||||||||||||||| ||    
T  27021468 aactgatatcaaaatattacttaatagtaatattacaatagaatcccaagaaattc--gagtcctggttccctcctcttcaagaattcgagagcttgatc 27021371  T
Q  394 tctcccta 401  Q
    ||||||||    
T  27021370 tctcccta 27021363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 30091898 - 30091852
Alignment:
Q  90 actctcagcttacta-tcgagttgtctgcttcggacttcaggtaact 135  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  30091898 actctcagcttactaatcgagctgtctgcttcggacttcaggtaact 30091852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 400
Target Start/End: Complemental strand, 30640782 - 30640722
Alignment:
Q  339 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 400  Q
    ||||||||||  ||||||||||| |||| || ||||||||||| ||||||||||||||||||    
T  30640782 ccaagaaatttgagagccttggt-ctctgccttccaagaattcaagagcttggtctctccct 30640722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 18132989 - 18133140
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  18132989 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 18133088  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133089 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 18133140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 21535920 - 21535769
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  21535920 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 21535821  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21535820 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 21535769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 18131783 - 18131934
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||    
T  18131783 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccttccaagtattcgagagc 18131882  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18131883 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttc 18131934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 21395592 - 21395743
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||    
T  21395592 gatagaaactgatatcaaaatataaactaacagtaagattataatataatcccaagaaattcaagagtcttggttgtctcccctccaagaattcgagagc 21395691  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  21395692 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttc 21395743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 289 - 393
Target Start/End: Original strand, 7033339 - 7033443
Alignment:
Q  289 ataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagct 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  7033339 ataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgaaagct 7033438  T
Q  389 tggtc 393  Q
    |||||    
T  7033439 tggtc 7033443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 28889748 - 28889874
Alignment:
Q  141 gaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatg 240  Q
    |||| ||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||| ||||||| ||||||||||    
T  28889748 gaaaccaactgatatagaagaatgaaatagggaaaatccatttgattacagaataatatcgcagaactttgagggtctgcaactccctaatgccaaaatg 28889847  T
Q  241 gccccttcccagtcaaatcctcagatg 267  Q
     ||||||||||||||||||||||||||    
T  28889848 accccttcccagtcaaatcctcagatg 28889874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 288 - 400
Target Start/End: Complemental strand, 4303152 - 4303040
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    ||||| ||||| |||||||||  ||| ||||| ||| | ||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4303152 gatagaaactggtatcaaaatccaaattaatattaataatacaatagattcccaagaaattctagagtcttggttctctcccctccaagaattcgagagc 4303053  T
Q  388 ttggtctctccct 400  Q
    |||||||||||||    
T  4303052 ttggtctctccct 4303040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 288 - 394
Target Start/End: Complemental strand, 16189779 - 16189671
Alignment:
Q  288 gataggaactgatatcaaaa--tataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgaga 385  Q
    ||||| ||||||||||||||  |||||| ||||||||| ||||||||| ||||||| | || |  ||||  |||||||||||||||||||||||||||||    
T  16189779 gatagaaactgatatcaaaacatataaattaatagtaatattacaatagaatcccatggaaattgagagtgttggttctctcccctccaagaattcgaga 16189680  T
Q  386 gcttggtct 394  Q
    |||||||||    
T  16189679 gcttggtct 16189671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 135 - 286
Target Start/End: Original strand, 39984803 - 39984954
Alignment:
Q  135 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39984803 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 39984902  T
Q  235 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39984903 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 39984954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 135 - 286
Target Start/End: Original strand, 39983742 - 39983893
Alignment:
Q  135 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39983742 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 39983841  T
Q  235 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39983842 taaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 39983893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 54994821 - 54994670
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  54994821 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagc 54994722  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54994721 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttc 54994670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 45826153 - 45826304
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  45826153 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagaattcgagagc 45826252  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45826253 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 45826304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 7197928 - 7197777
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  7197928 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 7197829  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  7197828 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttc 7197777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 290 - 439
Target Start/End: Complemental strand, 592711 - 592562
Alignment:
Q  290 taggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagctt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  592711 taggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagggtcttggttctctcccctccaagaattcgagagctt 592612  T
Q  390 ggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||    
T  592611 gggctctccctaccaatcctttatcccaatccctgaatacctttcttttc 592562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 136 - 285
Target Start/End: Original strand, 41968188 - 41968336
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  41968188 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagat-aatattgcagaacttcgagggtctgcacctccctattgcca 41968286  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41968287 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 41968336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 48637539 - 48637690
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||    
T  48637539 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaatttgagagtcttggttctctcccctccaagtattcgagagc 48637638  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| |||||||    
T  48637639 ttggtctctccctaccaatcctttatcccaatccctcaatacctctcttttc 48637690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 2386293 - 2386452
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagat--------tacaatataatcccaagaaattctagagccttggttctctcccctccaagaat 379  Q
    ||||| |||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||| |||| || |||||||||||||||||||||    
T  2386293 gatagaaactgatatcaaaatataaactaatagtaatatactaatattacaatataatcccaagaaattcgagagtctcggttctctcccctccaagaat 2386392  T
Q  380 tcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  2386393 tcgagagcttggtctctccctacctatcctttatctcaatccctgaatgcctttcttttc 2386452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 40977001 - 40976843
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  40977001 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaaaaaattcgagagtcttggttctctcccctccaagaattcgagagc 40976902  T
Q  388 ttggtctc-------tccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    ||||||||       ||| ||||  ||||||||||||||||||| || |||||||||||    
T  40976901 ttggtctctccatagtccataccagtcctttatcccaatccctgcatgcctttcttttc 40976843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 51274571 - 51274447
Alignment:
Q  315 taatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatcctttatc 414  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  51274571 taatagtaatattacaatataatcccaagaaattcgagagtcttggttctcccccctccaagaatttgagagcttggtctctccctacctatcctttatc 51274472  T
Q  415 ccaatccctgaatacctttcttttc 439  Q
    ||||||||||||| || ||||||||    
T  51274471 ccaatccctgaatgcccttcttttc 51274447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 14414340 - 14414236
Alignment:
Q  140 agaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaat 239  Q
    ||||| ||||||||| |||||||  |||||||| |||||  |||| ||||||||  |||| |||||||||| ||||||||||| |||||| | |||||||    
T  14414340 agaaaccaactgatatagaagaaggaaataggggaaatc--tttgtttacagaatgatatggcagaacttctagggtctgcacgtccctaatcccaaaat 14414243  T
Q  240 ggcccct 246  Q
    |||||||    
T  14414242 ggcccct 14414236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 16772790 - 16772848
Alignment:
Q  340 caagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 400  Q
    |||||||||| |||| |||||| ||||| | |||||||||||||||||||||||| |||||    
T  16772790 caagaaattcgagagtcttggt-ctctctc-tccaagaattcgagagcttggtctttccct 16772848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 49987228 - 49987286
Alignment:
Q  339 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 399  Q
    ||||||||||| |||| |||||| ||||||| |||||||||| ||||| ||||||||||||    
T  49987228 ccaagaaattcgagagtcttggt-ctctccc-tccaagaattagagagtttggtctctccc 49987286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 398
Target Start/End: Original strand, 54886899 - 54886927
Alignment:
Q  370 ctccaagaattcgagagcttggtctctcc 398  Q
    |||||||||||||||||||||||||||||    
T  54886899 ctccaagaattcgagagcttggtctctcc 54886927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 135 - 286
Target Start/End: Complemental strand, 14684707 - 14684556
Alignment:
Q  135 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14684707 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 14684608  T
Q  235 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14684607 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 14684556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 135 - 286
Target Start/End: Complemental strand, 21306563 - 21306412
Alignment:
Q  135 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21306563 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 21306464  T
Q  235 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21306463 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 21306412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 14685767 - 14685617
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14685767 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 14685668  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14685667 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 14685617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 30246608 - 30246458
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30246608 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 30246509  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30246508 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 30246458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 135 - 286
Target Start/End: Complemental strand, 40421531 - 40421380
Alignment:
Q  135 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  40421531 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagagtaatattgcagaacttcgagggtctgcacctccctattgcc 40421432  T
Q  235 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40421431 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 40421380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 136 - 286
Target Start/End: Original strand, 4517243 - 4517393
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4517243 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacatcgagggtctgcacctccctattgcca 4517342  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4517343 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 4517393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 21307619 - 21307469
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21307619 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 21307520  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21307519 aaaaggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 21307469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 40422589 - 40422439
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  40422589 tgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctattgcca 40422490  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40422489 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 40422439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 33790094 - 33789940
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattctagagccttggttctctcccctccaagaattcgag 384  Q
    ||||| |||||||||||||||||||| | |||||||  |||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||| |||    
T  33790094 gatagaaactgatatcaaaatataaatttatagtaattattacaatatataatcccaagaaattcgagagtcttggttctctcccctccaagaatttgag 33789995  T
Q  385 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33789994 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 33789940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 12325068 - 12324914
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaag-attacaatata--atcccaagaaattctagagccttggttctctcccctccaagaattcgag 384  Q
    ||||| |||||||||||||||||||| | |||||||  |||||||||||  |||||||| ||||| |||| |||||||||||||||||||| ||||||||    
T  12325068 gatagaaactgatatcaaaatataaatttatagtaattattacaatatataatcccaaggaattcgagagtcttggttctctcccctccaaaaattcgag 12324969  T
Q  385 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    || |||||||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  12324968 agtttggtctctccctaccaatcctttatcgcaatccctgaatagctttcttttc 12324914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 18955505 - 18955452
Alignment:
Q  362 tctctcccctccaagaattcgagagcttggtctctccctacctatcctttatcc 415  Q
    |||||||| |||||||||| ||||| |||||||||||||||| |||||||||||    
T  18955505 tctctcccttccaagaattagagagattggtctctccctaccaatcctttatcc 18955452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 13218743 - 13218802
Alignment:
Q  339 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 399  Q
    ||||||||||| ||||  |||| |||||||| | |||||||||||||||||||||||||||    
T  13218743 ccaagaaattcaagagt-ttgggtctctcccttgcaagaattcgagagcttggtctctccc 13218802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 3302494 - 3302449
Alignment:
Q  371 tccaagaattcgagagc-ttggtctctccctacctatcctttatcc 415  Q
    ||||||||||| ||||| |||||||||||||||| |||||||||||    
T  3302494 tccaagaattcaagagccttggtctctccctaccaatcctttatcc 3302449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 42599698 - 42599753
Alignment:
Q  339 ccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctc 395  Q
    ||||||||||| |||| ||||||| |||||| |||||||||| || |||||||||||    
T  42599698 ccaagaaattcaagagtcttggtt-tctcccttccaagaatttgaaagcttggtctc 42599753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 135 - 286
Target Start/End: Original strand, 8090040 - 8090191
Alignment:
Q  135 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8090040 ttgatagaaatcaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcc 8090139  T
Q  235 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8090140 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 8090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 8089720 - 8089871
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  8089720 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 8089819  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8089820 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttc 8089871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 8788534 - 8788685
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||    
T  8788534 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagaattcgaaagc 8788633  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8788634 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 8788685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 10582912 - 10582761
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  10582912 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 10582813  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10582812 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttc 10582761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 10584118 - 10583967
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  10584118 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 10584019  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10584018 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttc 10583967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 49122340 - 49122189
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  49122340 gataggaactgatatgaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 49122241  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49122240 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttc 49122189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 136 - 286
Target Start/End: Original strand, 27962617 - 27962767
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  27962617 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctaatgcca 27962716  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27962717 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 27962767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 136 - 286
Target Start/End: Original strand, 48907301 - 48907451
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  48907301 tgatagaaatcaattgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattacca 48907400  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48907401 aaatggccccttcccagtcaaatccttagatgcccctcaatcttcccatcc 48907451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 172880 - 173009
Alignment:
Q  156 agaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtca 255  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172880 agaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtca 172979  T
Q  256 aatcctcagatgcccctcaatcttcccatc 285  Q
    ||||||||||||||||||||||||||||||    
T  172980 aatcctcagatgcccctcaatcttcccatc 173009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 49123474 - 49123323
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||    
T  49123474 gataggaactgatatcaaaatataaactaatagtaagattagaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagtgc 49123375  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
        |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  49123374 ccaatctctccctaccaatcctttaccccaatccctgaatacctttcttttc 49123323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 49122124 - 49122000
Alignment:
Q  315 taatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatcctttatc 414  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  49122124 taatagtaagattacaatataatcccaagaaatttgagagtcttggttctctcccctccaagtattcgagagcttgatctctccctaccaatcctttatc 49122025  T
Q  415 ccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||||||||||||    
T  49122024 ccaatccctgaatacctttcttttc 49122000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 403
Target Start/End: Original strand, 23540880 - 23540998
Alignment:
Q  289 ataggaactgatatcaaaatat--aaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaa--ttcgag 384  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||| || |||||| |  ||| ||    
T  23540880 ataggaactgatatcaaaatatataaactaatagtaagattacagtataatcccaagaaattcaagagtcttggttttcttccttccaagtattttcaag 23540979  T
Q  385 agcttggtctctccctacc 403  Q
    |||||||||||||||||||    
T  23540980 agcttggtctctccctacc 23540998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 316 - 427
Target Start/End: Original strand, 23540999 - 23541112
Alignment:
Q  316 aatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaa--ttcgagagcttggtctctccctacctatcctttat 413  Q
    ||||||||||||||| |||||||||||||||||| |||| ||||||| ||| || |||||| |  ||| ||||||||||||||||||||| |||| ||||    
T  23540999 aatagtaagattacagtataatcccaagaaattcaagagtcttggttttcttccttccaagtattttcaagagcttggtctctccctaccaatccattat 23541098  T
Q  414 cccaatccctgaat 427  Q
    ||||||||||||||    
T  23541099 cccaatccctgaat 23541112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 288 - 400
Target Start/End: Complemental strand, 3815335 - 3815222
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataat-cccaagaaattctagagccttggttctctcccctccaagaattcgagag 386  Q
    ||||| |||||||||||||||| ||| ||||| ||| | ||||||| | | |||| ||||||| |||| ||||||||||||||||||||||||||||| |    
T  3815335 gatagaaactgatatcaaaatacaaattaatattaataatacaatagatttcccatgaaattcgagagtcttggttctctcccctccaagaattcgagtg 3815236  T
Q  387 cttggtctctccct 400  Q
    ||||||||||||||    
T  3815235 cttggtctctccct 3815222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 19950378 - 19950442
Alignment:
Q  328 acaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggt 392  Q
    |||||| | ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  19950378 acaataaattcccaagaaatttgagagccttggttctctcccctccaagaattcgagagcttggt 19950442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 400
Target Start/End: Original strand, 36346541 - 36346653
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    ||||| |||||||| ||||||| ||| ||||| ||| | |||| ||    |||||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  36346541 gatagaaactgataccaaaatacaaattaatattaataatacagtagttccccaagaaattcgagagtcttggttctctcccctccatgaattcgagagc 36346640  T
Q  388 ttggtctctccct 400  Q
    ||| |||||||||    
T  36346641 ttgatctctccct 36346653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 17826222 - 17826271
Alignment:
Q  350 tagagccttggttctctcccctccaagaattcgagagcttggtctctccc 399  Q
    ||||| ||||| ||||  ||||||||||||||||||||||||||||||||    
T  17826222 tagagtcttgggtctcctccctccaagaattcgagagcttggtctctccc 17826271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 30038108 - 30038170
Alignment:
Q  337 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 399  Q
    ||||||||||||| |||| | | | |||||||| ||||||||||| |||| ||||||||||||    
T  30038108 tcccaagaaattcaagagtcgtcggtctctcccttccaagaattcaagagtttggtctctccc 30038170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 40670604 - 40670646
Alignment:
Q  358 tggttctctcccctccaagaattcgagagcttggtctctccct 400  Q
    |||||||||||| |||||||||| |||||||||| ||||||||    
T  40670604 tggttctctcccgtccaagaatttgagagcttggcctctccct 40670646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 136 - 286
Target Start/End: Original strand, 45036163 - 45036313
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45036163 tgatagaaatcaactgatatagaagaataaaatagggaaaattcctttgattacagaataatattgcagaacttcgagggtctgcacctccctattgcca 45036262  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45036263 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 45036313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 136 - 286
Target Start/End: Original strand, 6540576 - 6540728
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgc-- 233  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||      
T  6540576 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattacagaataatattgcagaacttcaagggtctgcacctccctaatgcca 6540675  T
Q  234 caaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6540676 caaaatggccccttcccagtcaagtcctcagatgcccctcaatcttcccatcc 6540728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 136 - 286
Target Start/End: Complemental strand, 13255714 - 13255565
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||| ||||||||| ||||||||||| | || ||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13255714 tgatagaaaccaactgatatagaagaataaatttggtaaattcc-tttgattacagaataatattgcagaacttcaagggtctgcacctccctattgcca 13255616  T
Q  236 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13255615 aaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatcc 13255565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 40254615 - 40254466
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  40254615 gatagaaacagatatcaaaatataaattaatagtaatattacaatagaatcccaagaaattcgagagtcttggttctctcccctccaagaatt-gagagc 40254517  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  40254516 ttggtctctccctaccaatcctttatcccaatccctgaat-cctttcttttc 40254466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 21661290 - 21661182
Alignment:
Q  291 aggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttg 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  21661290 aggaactgatatcaaaatataaactaatagtaagattacaatatattcccaagaaattcgagagtcttggttctctcccctccaataattcgagagcttg 21661191  T
Q  391 gtctctccc 399  Q
    |||||||||    
T  21661190 gtctctccc 21661182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 288 - 415
Target Start/End: Original strand, 2411062 - 2411187
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||  ||||||||||||||  |||| |||| |||||||||||||| ||||||  ||||    
T  2411062 gatagaaactgatatcaaaatataaactaatagtaatattacaatcgaatcccaagaaatttgagagtcttgattctctcccctccaggaattc--gagc 2411159  T
Q  388 ttggtctctccctacctatcctttatcc 415  Q
    |||||||||||||||| |||||||||||    
T  2411160 ttggtctctccctaccaatcctttatcc 2411187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 26246969 - 26247043
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggtt 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  26246969 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggtt 26247043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 5176597 - 5176658
Alignment:
Q  337 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 399  Q
    ||||||| ||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||    
T  5176597 tcccaaggaattcgagagtcttgggtctctccc-tccaagaattcgagagcttggtctctccc 5176658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 395
Target Start/End: Complemental strand, 26187599 - 26187541
Alignment:
Q  337 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctc 395  Q
    ||||||||||||  |||||||||| |||||||| |||||||||| ||||||||||||||    
T  26187599 tcccaagaaatttgagagccttgggtctctcccttccaagaatttgagagcttggtctc 26187541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 13261037 - 13260936
Alignment:
Q  315 taatagtaagattacaatataatcccaagaaattctagagccttggttctctccc-ctccaagaattcgagagcttggtctctccctacctatcctttat 413  Q
    |||||||||  |||||||| | ||||||||||||| |||| ||||| ||||||||  | |||||||  ||||||||  |||||||| ||| |||||||||    
T  13261037 taatagtaatgttacaataaattcccaagaaattcgagagtcttggatctctcccttttcaagaatcagagagcttattctctcccgaccaatcctttat 13260938  T
Q  414 cc 415  Q
    ||    
T  13260937 cc 13260936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 19729244 - 19729212
Alignment:
Q  366 tcccctccaagaattcgagagcttggtctctcc 398  Q
    |||| ||||||||||||||||||||||||||||    
T  19729244 tcccttccaagaattcgagagcttggtctctcc 19729212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 43506411 - 43506470
Alignment:
Q  340 caagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccct 400  Q
    |||||||||| |||| |||||| ||||||| |  ||||||| |||||||||||||||||||    
T  43506411 caagaaattcgagagtcttggt-ctctccctttgaagaattagagagcttggtctctccct 43506470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 288 - 438
Target Start/End: Complemental strand, 80929 - 80779
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  80929 gataggaactgatatcaaaatataaactaatagtaatattacaatataatcccaataaattcgagagtcttggttctctcccctccaagaattcgagagc 80830  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttctttt 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80829 ttggtctctccctacctatcctttatcccaatccctgaatacctttctttt 80779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 293 - 439
Target Start/End: Complemental strand, 79728 - 79582
Alignment:
Q  293 gaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggt 392  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  79728 gaactgatatcaaaatataaactaatagtaatattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattcgagagcttggt 79629  T
Q  393 ctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||| |||||||||||||||| ||||| ||||||||||| |||||    
T  79628 ctctccgtacctatcctttatcctaatccatgaatacctttattttc 79582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 135 - 285
Target Start/End: Original strand, 54938828 - 54938978
Alignment:
Q  135 ttgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcc 234  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  54938828 ttgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataatattgcagaacttcgagggtctgcacctccctattgcc 54938927  T
Q  235 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54938928 aaaatggccccttcccagtcaaatcctcagatgcccctcaatcttcccatc 54938978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 11962242 - 11962091
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||    
T  11962242 gataggaactgatatcaaaatataaactaatagttagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtgttcgagagc 11962143  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    ||||||| |||||||| |||||||| |||||| |||||||||||||||||||    
T  11962142 ttggtctatccctaccaatcctttaccccaatgcctgaatacctttcttttc 11962091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 136 - 256
Target Start/End: Original strand, 54937788 - 54937908
Alignment:
Q  136 tgatagaaatcaactgatacagaagaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgcca 235  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |    
T  54937788 tgatagaaaccaactgatatagaagaataaaatagggaaaatccctttgattactgaataatattgcagaacttcgagggtctgcacctccctattgcta 54937887  T
Q  236 aaatggccccttcccagtcaa 256  Q
    |||||||||||||||||||||    
T  54937888 aaatggccccttcccagtcaa 54937908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 288 - 421
Target Start/End: Complemental strand, 3567178 - 3567045
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||||| |||| |||||||||| |  | |||||||||||||||||||||||||||| ||     
T  3567178 gatagaaactgagatcaaaatataacctaatagtaatattacaatacaatctcaagaaattcaattgtcttggttctctcccctccaagaattcgatagt 3567079  T
Q  388 ttggtctctccctacctatcctttatcccaatcc 421  Q
    |||||||||||||||||||||||||| |||||||    
T  3567078 ttggtctctccctacctatcctttattccaatcc 3567045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 372 - 439
Target Start/End: Original strand, 45638746 - 45638813
Alignment:
Q  372 ccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  45638746 ccaagaattcgagagcttggtctctccctacctaccctttatcccaatccctgaatgcctttcttttc 45638813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 403
Target Start/End: Complemental strand, 27869434 - 27869371
Alignment:
Q  340 caagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacc 403  Q
    |||||||||| |||| ||||  |||||||| ||||||||||| |||||||||||||||||||||    
T  27869434 caagaaattcgagagtcttgcatctctcccttccaagaattcaagagcttggtctctccctacc 27869371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 45638710 - 45638752
Alignment:
Q  303 caaaatataaactaatagtaagattacaatataatcccaagaa 345  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  45638710 caaagtataaactaatagtaatattacaatataatcccaagaa 45638752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 32992448 - 32992387
Alignment:
Q  337 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccc 399  Q
    ||||||| ||||| |||| ||||| |||||||| |||||||| |||||||||| |||||||||    
T  32992448 tcccaaggaattcgagagtcttgggtctctccc-tccaagaactcgagagctttgtctctccc 32992387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 36982313 - 36982362
Alignment:
Q  337 tcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    ||||||| |||||||||| ||||| |||||||| |||||||||||||||||    
T  36982313 tcccaaggaattctagagtcttggatctctccc-tccaagaattcgagagc 36982362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 211667 - 211818
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  211667 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 211766  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  211767 ttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttc 211818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 205590 - 205741
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  205590 gataggaactgatatcaaaatataaactaatagtaagattacaatacaatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 205689  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  205690 ttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttc 205741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 22950475 - 22950324
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  22950475 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 22950376  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  22950375 ttggtctctccctaccaatcctttatcccaatccctgaatacctttattttc 22950324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 39701589 - 39701740
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  39701589 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 39701688  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  39701689 ttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttc 39701740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 39702819 - 39702970
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  39702819 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagc 39702918  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  39702919 ttggtctctccctaccgatcctttatcccaatccctgaatgcctttcttttc 39702970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 29526039 - 29526191
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||    
T  29526039 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaatccgagagtcttggttctctcccctccaagaattcgagagc 29526138  T
Q  388 ttggtctctccctacctatccttt-atcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  29526139 ttggtctctccctaccaatcctttaatcccaatccctgaatacctttcttttc 29526191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 19934768 - 19934617
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||    
T  19934768 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcaagagtcttggttctctcccctccaagtattcgagagc 19934669  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||||    
T  19934668 ttggtctctccctaccaatcctttatcccaatccctaaatgcctttcttttc 19934617  T

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Target: chr5; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 29527252 - 29527404
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctct-cccctccaagaattcgagag 386  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||    
T  29527252 gataggaacagatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctccccctccaagaattcaagag 29527351  T
Q  387 cttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29527352 cttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttc 29527404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 288 - 397
Target Start/End: Complemental strand, 19139483 - 19139374
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  19139483 gatagaaactgatatcaaaatttaaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagaattagagagc 19139384  T
Q  388 ttggtctctc 397  Q
    ||||| ||||    
T  19139383 ttggtttctc 19139374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 288 - 439
Target Start/End: Original strand, 41050926 - 41051080
Alignment:
Q  288 gataggaactgatatcaaaat-ataaactaatagtaag-attacaatataatcccaagaaattct-agagccttggttctctcccctccaagaattcgag 384  Q
    ||||| ||||||||||||||| ||||| | |||||||  || |||||| |||||||||||||||  |||| ||||||||| |||||||||||||||| ||    
T  41050926 gatagaaactgatatcaaaattataaatttatagtaattatcacaatagaatcccaagaaattccgagagtcttggttctgtcccctccaagaattcaag 41051025  T
Q  385 agcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  41051026 agcttggtctctccctacctatcctttatcccaatccctgaatatctgtcttttc 41051080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 5033290 - 5033188
Alignment:
Q  159 agaataaaatagggaaaatccctttgattacagaagaatattgcagaacttcgagggtctgcacctccctattgccaaaatggccccttcccagtcaaat 258  Q
    ||||||||||||||||| ||||||||||||||||| || ||  |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  5033290 agaataaaatagggaaa-tccctttgattacagaa-aacatcacagaactttgaggctctgcacctccctat-gccaaaatggccccttcccagtcaaat 5033194  T
Q  259 cctcag 264  Q
    ||||||    
T  5033193 cctcag 5033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 288 - 400
Target Start/End: Original strand, 35144500 - 35144613
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaata-taatcccaagaaattctagagccttggttctctcccctccaagaattcgagag 386  Q
    ||||| |||||||||||||||  ||| ||||| ||| | ||||||| |  ||| ||||||||| |||| ||||||||||||||||||||||||||||||     
T  35144500 gatagaaactgatatcaaaattcaaattaatattaataatacaatagttttcctaagaaattcgagagtcttggttctctcccctccaagaattcgagac 35144599  T
Q  387 cttggtctctccct 400  Q
    ||||||||||||||    
T  35144600 cttggtctctccct 35144613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 400
Target Start/End: Complemental strand, 37473660 - 37473631
Alignment:
Q  371 tccaagaattcgagagcttggtctctccct 400  Q
    ||||||||||||||||||||||||||||||    
T  37473660 tccaagaattcgagagcttggtctctccct 37473631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 11288 - 11137
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||  |||||||||    
T  11288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattcgagagtcttggttctctcccttccaagttttcgagagc 11189  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  11188 ttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttc 11137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 12436 - 12285
Alignment:
Q  288 gataggaactgatatcaaaatataaactaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagc 387  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||| |||||    
T  12436 gataggaacttatatcaaaatataaactaatagtaatattacaatataatcccaagaaattagagagtcttggttctctcccctccaagagttcaagagc 12337  T
Q  388 ttggtctctccctacctatcctttatcccaatccctgaatacctttcttttc 439  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12336 ttggtctctccctacctatcctttatcccaatccctgaataactttcttttc 12285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 313 - 439
Target Start/End: Original strand, 177889 - 178015
Alignment:
Q  313 actaatagtaagattacaatataatcccaagaaattctagagccttggttctctcccctccaagaattcgagagcttggtctctccctacctatccttta 412  Q
    |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  177889 actaatggtaagattacaatataatcccaagaaattcgagagtcttggttctctcccctccaagtattcgagagcttggtctctccctaccaatccttta 177988  T
Q  413 tcccaatccctgaatacctttcttttc 439  Q
     ||||||||||||||||||||||||||    
T  177989 ccccaatccctgaatacctttcttttc 178015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 399
Target Start/End: Complemental strand, 33934 - 33903
Alignment:
Q  368 ccctccaagaattcgagagcttggtctctccc 399  Q
    ||||||||||||||||||||||||||||||||    
T  33934 ccctccaagaattcgagagcttggtctctccc 33903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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