View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_high_17 (Length: 380)
Name: NF16573_high_17
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 31054770 - 31054440
Alignment:
| Q |
11 |
aagcaaaggaaggggaagaaaaacttacataatgacggcaaacttcacatttaggatggctcaattctttaaaacaatacttgtgatatggatgcttccc |
110 |
Q |
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| T |
31054770 |
aagcaaaggaaggggaagaaaaacttacataatgacggcaaacttcacatttaggatggctcaattctttaaaacaatacttgtgatatggatgcttccc |
31054671 |
T |
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| Q |
111 |
tgacaaagaaaacttggatcaacagaaacaaaaggccgtaagagatggataaaagagaagtgttaaaatcaatttgtttgtaagcatagctttgaaagtg |
210 |
Q |
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| T |
31054670 |
tgacaaagaaaacttggatcaacagaaacaaaaggccgtaagagatggataaaagagaagtgttaaaatcaatttgtctgtaagcatagctttgaaagtg |
31054571 |
T |
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| Q |
211 |
taaatagcatacttttgttggaaaatattgaagtatgataaatgtaagagtggatctacatgatgtgcctgtgtaaatgtgtgttaaggcttgaaaatag |
310 |
Q |
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| T |
31054570 |
taaatagcatacttttgttggaaaatattgaagtatgataaatgtatgagtgcatctacatgatgtgcctgtgtaaatgtgtgttaaggcttgaaaatag |
31054471 |
T |
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| Q |
311 |
cttatttcaatatatgctctacatctcaaga |
341 |
Q |
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| T |
31054470 |
attatatcaatatatgctctaaatctcaaga |
31054440 |
T |
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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 34744012 - 34744107
Alignment:
| Q |
48 |
gcaaacttcacatttaggatggctcaattctttaaaacaatacttgtgatatggatgcttccctgacaaagaaaacttggatcaacagaaacaaaa |
143 |
Q |
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||||||||||||||| || || |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
34744012 |
gcaaacttcacattttgggtgagtcaactctttaaaacaagatttgtgatatggatgcttccctgacaaagaaaacttggatcaacaaaaaaaaaa |
34744107 |
T |
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