View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16573_high_27 (Length: 318)

Name: NF16573_high_27
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16573_high_27
NF16573_high_27
[»] scaffold0004 (1 HSPs)
scaffold0004 (12-171)||(346982-347141)
[»] chr7 (11 HSPs)
chr7 (12-171)||(16647114-16647273)
chr7 (12-171)||(571995-572154)
chr7 (12-171)||(32147169-32147328)
chr7 (12-171)||(42207608-42207767)
chr7 (12-171)||(17621475-17621634)
chr7 (12-171)||(44659420-44659581)
chr7 (12-171)||(25497742-25497903)
chr7 (12-171)||(42163564-42163725)
chr7 (15-123)||(26457974-26458085)
chr7 (12-123)||(23897384-23897498)
chr7 (18-142)||(34324985-34325108)
[»] chr4 (7 HSPs)
chr4 (12-171)||(20193902-20194061)
chr4 (12-171)||(53980782-53980943)
chr4 (15-159)||(12750208-12750353)
chr4 (29-159)||(2925522-2925653)
chr4 (30-118)||(22747655-22747745)
chr4 (12-119)||(53528319-53528428)
chr4 (15-157)||(19569153-19569296)
[»] chr3 (9 HSPs)
chr3 (12-171)||(13989523-13989682)
chr3 (12-171)||(23343067-23343226)
chr3 (12-171)||(2169960-2170119)
chr3 (12-171)||(9725993-9726152)
chr3 (39-171)||(13981932-13982066)
chr3 (12-142)||(17031765-17031896)
chr3 (59-118)||(13925174-13925233)
chr3 (15-104)||(10935792-10935883)
chr3 (12-104)||(7870505-7870597)
[»] chr2 (15 HSPs)
chr2 (12-171)||(634973-635132)
chr2 (12-171)||(7911272-7911431)
chr2 (12-171)||(14897474-14897633)
chr2 (12-171)||(22429037-22429196)
chr2 (12-171)||(22434631-22434790)
chr2 (12-171)||(43775681-43775840)
chr2 (12-171)||(1524421-1524582)
chr2 (12-88)||(14889408-14889484)
chr2 (107-171)||(14889480-14889544)
chr2 (12-125)||(19088122-19088237)
chr2 (29-125)||(16444724-16444822)
chr2 (12-120)||(25229489-25229599)
chr2 (53-118)||(7386179-7386244)
chr2 (30-165)||(11310713-11310850)
chr2 (29-80)||(21290995-21291048)
[»] chr1 (7 HSPs)
chr1 (12-171)||(15715313-15715472)
chr1 (15-171)||(33494234-33494390)
chr1 (12-134)||(3618099-3618223)
chr1 (12-171)||(22577485-22577645)
chr1 (27-125)||(40275583-40275683)
chr1 (15-125)||(26027383-26027495)
chr1 (66-123)||(49626392-49626449)
[»] chr5 (7 HSPs)
chr5 (12-169)||(28368293-28368450)
chr5 (12-171)||(30958833-30958992)
chr5 (12-171)||(1532975-1533136)
chr5 (12-125)||(25105782-25105897)
chr5 (12-125)||(25164875-25164990)
chr5 (15-90)||(18084624-18084701)
chr5 (15-48)||(26460681-26460714)
[»] chr6 (5 HSPs)
chr6 (12-169)||(14851333-14851490)
chr6 (12-118)||(19442492-19442600)
chr6 (39-120)||(14462086-14462168)
chr6 (53-171)||(6931792-6931909)
chr6 (12-158)||(17271452-17271598)
[»] scaffold0062 (2 HSPs)
scaffold0062 (15-159)||(18583-18728)
scaffold0062 (15-159)||(28751-28896)
[»] scaffold0102 (1 HSPs)
scaffold0102 (30-120)||(10665-10757)
[»] chr8 (3 HSPs)
chr8 (12-158)||(17906318-17906464)
chr8 (58-142)||(11685526-11685609)
chr8 (15-159)||(29541989-29542134)
[»] scaffold0066 (1 HSPs)
scaffold0066 (12-164)||(10575-10727)


Alignment Details
Target: scaffold0004 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 347141 - 346982
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  347141 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 347042  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  347041 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 346982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 16647114 - 16647273
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16647114 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 16647213  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  16647214 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 16647273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 572154 - 571995
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  572154 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 572055  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| || |||| |||||||||||||||||||    
T  572054 aaaatatctacagaatggaaagagacaattctacttaaatcaaactcgtttcatgaagca 571995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 32147169 - 32147328
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  32147169 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaat 32147268  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  32147269 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 32147328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 42207608 - 42207767
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42207608 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 42207707  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| ||| |||| |||||| ||||||| ||||||| |||||||||||    
T  42207708 aaaatatctacagaatggaatgagacaattctactgaaatcaaactcgcttcatgaagca 42207767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 17621475 - 17621634
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17621475 atgaagttaacgtcgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 17621574  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||| ||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  17621575 aaaatatctacaaaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 17621634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 44659420 - 44659581
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44659420 atgaagtcaacattgacgtgtttttgcatataatatagcgctatatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataa 44659519  T
Q  110 agaaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    | |||||||||||||||| ||||||||  ||||| ||||||| |||||||||||||||||||    
T  44659520 ataaaatatctacagaatggaaagagacgattctactgaaatcaaactcgtttcatgaagca 44659581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 25497742 - 25497903
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||  | ||||||||||||| || ||||||| ||||||| |||||||||||||||||||    
T  25497742 atgaagtcaacgttgacgtgtttttgcatataatacagcgctatatgtgataagtaataatcagaatcatgtgttaaagttgactaaagattatagataa 25497841  T
Q  110 agaaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||||| |||||||| |||||| ||||||| ||||||| |||||||||||    
T  25497842 agaaaatatctacagaatggaaagagacaattctactgaaatcaaactcgcttcatgaagca 25497903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 42163725 - 42163564
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||| ||||| |||| |||||||||||||||||||||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42163725 atgaaatcaacgttgacgtgtttttgcatataatatagcgctatatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataa 42163626  T
Q  110 agaaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||| ||||  |||||||| |||||| ||||||| |||| || |||||||||||    
T  42163625 agaaaatatctatagaacggaaagagacaattctactgaaatcaaacccgcttcatgaagca 42163564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 26458085 - 26457974
Alignment:
Q  15 aagtcaacattgatg-tgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||  | |||  || ||||||||||||||| ||||||||| |  |||| ||| ||| ||||    
T  26458085 aagtcaacattgatgatgtttttgcatataatatagcgctatatgtgattggtgataatgaggatcatgaattaaagtctataaaaggttacagaaaaag 26457986  T
Q  112 aaaatatctaca 123  Q
    |||| |||||||    
T  26457985 aaaacatctaca 26457974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 23897384 - 23897498
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataa-gtaataatgaggatcatgtattaaagtcgactaaagattatagata 108  Q
    ||||||||||||||||  |  ||||||||||||||||| |||||  | ||||| ||||| ||||||||||||  ||||| || | |||||||||||||||    
T  23897384 atgaagtcaacattgacttccttttgcatataatatagtgctatatgtgataatgtaatgatgaggatcatgggttaaaatctattaaagattatagata 23897483  T
Q  109 aagaaaatatctaca 123  Q
    |||||||||| ||||    
T  23897484 aagaaaatatataca 23897498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 34324985 - 34325108
Alignment:
Q  18 tcaacattgatgtgtttttgcatataatatagcgc--tatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaa 115  Q
    ||||||| || ||||||||| ||||||||||| ||  |||  ||||||||||||||||||| ||| ||| ||||| | ||||||  ||||| ||||||||    
T  34324985 tcaacatcgacgtgtttttggatataatatagtgctatatatgataagtaataatgaggataatgaattcaagtctattaaaga--atagaaaaagaaaa 34325082  T
Q  116 tatctacagaatagaaagagataattc 142  Q
    ||| | ||| ||||||||||| |||||    
T  34325083 tatatgcag-atagaaagagacaattc 34325108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 20194061 - 20193902
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20194061 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 20193962  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  20193961 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 20193902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 53980782 - 53980943
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||| |||| |||||||||||||||||||||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53980782 atgaagtcaacgttgacgtgtttttgcatataatatagcgctatatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataa 53980881  T
Q  110 agaaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  53980882 agaaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 53980943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 12750353 - 12750208
Alignment:
Q  15 aagtcaacattgatgtgtttttgcatataatatagcgctatgc--gataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaaga 112  Q
    |||||||| | || ||||||||| |||||||||||||||||    |||||||||||| |||||||||| ||| ||||| | ||||||||||||| |||||    
T  12750353 aagtcaacgtcgacgtgtttttggatataatatagcgctatatatgataagtaataacgaggatcatgaatttaagtctattaaagattatagaaaaaga 12750254  T
Q  113 aaatatctacagaatagaaagagataattctcctgaaattaaactcg 159  Q
    |||||||||||| ||||||||||| |||||   |||||| |||||||    
T  12750253 aaatatctacag-atagaaagagacaattccagtgaaatcaaactcg 12750208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 2925653 - 2925522
Alignment:
Q  29 gtgtttttgcatataatatagcgctatgc--gataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatatctacagaa 126  Q
    ||||||||| |||||||||||||||||    ||||||||||||||||||||||| ||| ||||| | ||||||||||||| ||||||||||| |  || |    
T  2925653 gtgtttttggatataatatagcgctatatatgataagtaataatgaggatcatgaattcaagtctattaaagattatagaaaaagaaaatatttgtag-a 2925555  T
Q  127 tagaaagagataattctcctgaaattaaactcg 159  Q
    |||||||||| |||||   |||||| |||||||    
T  2925554 tagaaagagacaattccagtgaaatcaaactcg 2925522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 22747655 - 22747745
Alignment:
Q  30 tgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatat 118  Q
    ||||| || |||||||||||||||||  | ||||||||||||||||||||||| ||| ||||| | ||||||||||||| |||||||||||    
T  22747655 tgtttatggatataatatagcgctatatgtgataagtaataatgaggatcatgaattcaagtctattaaagattatagaaaaagaaaatat 22747745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 53528319 - 53528428
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    |||||||||||||||| ||| |||||||||||| | || | |||  | |||| | ||||||||||||||||| |||||||| | ||||||||||| ||||    
T  53528319 atgaagtcaacattgacgtgattttgcatataacacagtgttatatgtgataggaaataatgaggatcatgtgttaaagtctattaaagattataaataa 53528418  T
Q  110 agaaaatatc 119  Q
    ||||||||||    
T  53528419 agaaaatatc 53528428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 19569153 - 19569296
Alignment:
Q  15 aagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaaga 112  Q
    |||||||| ||||  ||||||| | ||||||||||| ||||  | |||| || |||||||| ||||||  |||||||| | ||||||| |||||||||||    
T  19569153 aagtcaacgttgacatgtttttacgtataatatagcactatatgtgatacgttataatgagaatcatgggttaaagtctattaaagataatagataaaga 19569252  T
Q  113 aaatatctacagaatagaaagagataattctcctgaaattaaact 157  Q
    |||||||| || |||| ||||||| ||||||  |||||| |||||    
T  19569253 aaatatctgca-aataaaaagagaaaattctagtgaaatcaaact 19569296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 13989523 - 13989682
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13989523 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 13989622  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  13989623 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 13989682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 23343067 - 23343226
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23343067 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 23343166  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  23343167 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 23343226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 2170119 - 2169960
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2170119 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 2170020  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||| ||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  2170019 aaaatatctacataatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 2169960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 9726152 - 9725993
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  9726152 atgaagtcaacgttgatgtgtttttgcatataatatagcactatgtgataagtaataatgaggatcatgtgttaaagtcaactaaagattatagataaag 9726053  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  9726052 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 9725993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 13982066 - 13981932
Alignment:
Q  39 atataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatatctacagaatagaaagaga 136  Q
    |||||||||||||||||  | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13982066 atataatatagcgctatatgtgataagtaataatgaggatcatgggttaaagtcgactaaagattatagataaagaaaatatctacagaatggaaagaga 13981967  T
Q  137 taattctcctgaaattaaactcgtttcatgaagca 171  Q
     |||||| ||||||| ||||||| |||||||||||    
T  13981966 caattctactgaaatcaaactcgcttcatgaagca 13981932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 17031765 - 17031896
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcg--ataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||| | || || |||||| |||| |||||| |||||  |  ||||||||||||||||||||||  |||||||| | | |||||||||||| |    
T  17031765 atgaagtcaacgtcgacgtatttttggatattatatagtgctatatgttataagtaataatgaggatcatgagttaaagtctattgaagattatagatga 17031864  T
Q  110 agaaaatatctacagaatagaaagagataattc 142  Q
    ||||||||| |||| ||| |||||||| |||||    
T  17031865 agaaaatatgtaca-aatggaaagagacaattc 17031896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 13925174 - 13925233
Alignment:
Q  59 ataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatat 118  Q
    |||||||||||||||||||||| ||| ||||| | ||||| ||||||| |||||||||||    
T  13925174 ataagtaataatgaggatcatgaattcaagtctattaaagtttatagaaaaagaaaatat 13925233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 10935792 - 10935883
Alignment:
Q  15 aagtcaacattgatgtgtttttgcatataatatagcgctatgcg--ataagtaataatgaggatcatgtattaaagtcgactaaagattata 104  Q
    |||||||| |||| |||||| ||||||||||||  ||||||  |  ||||||||||||||||||||||  || ||||| | |||||||||||    
T  10935792 aagtcaacgttgacgtgtttatgcatataatatgacgctatatgtaataagtaataatgaggatcatggttttaagtctattaaagattata 10935883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 7870597 - 7870505
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgc--tatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattata 104  Q
    ||||||||||| | || ||||||||  ||||||||||||||  |||| ||||||||  |||||||||||||  |||||||| | |||||| ||||    
T  7870597 atgaagtcaacgtcgacgtgttttttaatataatatagcgctatatgtgataagta--aatgaggatcatgagttaaagtctattaaagactata 7870505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 634973 - 635132
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  634973 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 635072  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  635073 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 635132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 7911431 - 7911272
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7911431 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 7911332  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  7911331 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 7911272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 14897474 - 14897633
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14897474 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 14897573  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  14897574 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 14897633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 22429037 - 22429196
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22429037 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 22429136  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  22429137 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 22429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 22434631 - 22434790
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22434631 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 22434730  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  22434731 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 22434790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 43775681 - 43775840
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43775681 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 43775780  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  43775781 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 43775840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 1524421 - 1524582
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||| |||| |||||||||||||||||||||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1524421 atgaagtcaacgttgacgtgtttttgcatataatatagcgctatatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataa 1524520  T
Q  110 agaaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  1524521 agaaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 1524582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 14889408 - 14889484
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaag 88  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  14889408 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaag 14889484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 14889480 - 14889544
Alignment:
Q  107 taaagaaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  14889480 taaagaaaatatctacagaatggaaagagataattctactgaaatcaaactcgtttcatgaagca 14889544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 19088122 - 19088237
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||  | || ||||||||| |||||||||||||||||  | ||||||||||||||||||||||| |||  |||| | ||||||||| ||| ||    
T  19088122 atgaagtcaaggtcgacgtgtttttggatataatatagcgctatatgtgataagtaataatgaggatcatgaattctagtctattaaagattacagaaaa 19088221  T
Q  110 agaaaatatctacaga 125  Q
    ||||||||||||||||    
T  19088222 agaaaatatctacaga 19088237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 16444822 - 16444724
Alignment:
Q  29 gtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatatctacaga 125  Q
    ||||||||| |||||||||||||||||  | ||||||||||||||| ||||||| ||| ||||| | ||||||||||||| ||||||||||||| ||||    
T  16444822 gtgtttttggatataatatagcgctatatgtgataagtaataatgaagatcatgaattcaagtctattaaagattatagaaaaagaaaatatctgcaga 16444724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 25229489 - 25229599
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    |||||||||||||  | ||||||||  |||||||||||||||||  | ||||| ||||||||||||||||||||| ||||| | ||||||||||||| ||    
T  25229489 atgaagtcaacatcaacgtgtttttagatataatatagcgctatatgtgataattaataatgaggatcatgtattcaagtctattaaagattatagaaaa 25229588  T
Q  110 agaaaatatct 120  Q
     ||||||||||    
T  25229589 ggaaaatatct 25229599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 7386244 - 7386179
Alignment:
Q  53 tatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatat 118  Q
    |||| ||||||||||||||||||||||| ||| ||||| | ||||||||||||| || ||||||||    
T  7386244 tatgtgataagtaataatgaggatcatgaattcaagtctattaaagattatagaaaaggaaaatat 7386179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 11310713 - 11310850
Alignment:
Q  30 tgtttttgcatataatatagcgctat----gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatatctacaga 125  Q
    |||| ||| |||||||||||||||||    | |||||||||||||||||||||||  |||||||| | |||||| | ||||||||||||| |  | || |    
T  11310713 tgttattggatataatatagcgctatatgtgtgataagtaataatgaggatcatg-gttaaagtctattaaagactgtagataaagaaaaaaatttca-a 11310810  T
Q  126 atagaaagagataattctcctgaaattaaactcgtttcat 165  Q
    || |||||||| |||||   |||||| |||||||||||||    
T  11310811 atggaaagagacaattccggtgaaatcaaactcgtttcat 11310850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 21291048 - 21290995
Alignment:
Q  29 gtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatg 80  Q
    ||||||||| ||||||| |||||||||  | |||||||||||||||||||||||    
T  21291048 gtgtttttggatataatctagcgctatatgtgataagtaataatgaggatcatg 21290995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 15715313 - 15715472
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15715313 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 15715412  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  15715413 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 15715472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 33494390 - 33494234
Alignment:
Q  15 aagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaa 114  Q
    |||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  33494390 aagtcaacgttgatgtgtttttgcatataatatagcgttatgtgataagtaataatgaggatcatgtgctaaagtcgactaaagattatagataaagaaa 33494291  T
Q  115 atatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    ||||||||| ||| |||||||| |||||| ||||||| ||||||| |||||||||||    
T  33494290 atatctacataatggaaagagacaattctactgaaatcaaactcgcttcatgaagca 33494234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 3618223 - 3618099
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||| |||| ||| ||||||||||||||||| | |||  | |||||||||||||||||| |||||||||||||| | ||||||||||||||||    
T  3618223 atgaagtcaacgttgacgtgcttttgcatataatatagtgatatatgtgataagtaataatgaggaccatgtattaaagtctattaaagattatagataa 3618124  T
Q  110 agaaaatatctacagaatagaaaga 134  Q
    |||||||||||||| ||||||||||    
T  3618123 agaaaatatctacaaaatagaaaga 3618099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 22577645 - 22577485
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||  |||  |||||||||||||||||||||||||||  ||||||||||||||||| |||||||  |||||||  | ||||||||||||||||    
T  22577645 atgaagtcaatgttggcgtgtttttgcatataatatagcgctatatgcgataagtaataatgaagatcatgagttaaagtatattaaagattatagataa 22577546  T
Q  110 agaaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    | |||||||||||| ||| |||||||| |||||   |||||| ||||||| ||||| |||||    
T  22577545 ataaaatatctaca-aatggaaagagacaattccaatgaaatcaaactcgcttcataaagca 22577485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 40275683 - 40275583
Alignment:
Q  27 atgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatatctacag 124  Q
    ||||||||||| |||||||||||||||||  | ||||||||||| |||||||||||  |||||||| | ||||||||||||| ||||||||||||| |||    
T  40275683 atgtgtttttgaatataatatagcgctatatgtgataagtaatattgaggatcatgagttaaagtctattaaagattatagaaaaagaaaatatctgcag 40275584  T
Q  125 a 125  Q
    |    
T  40275583 a 40275583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 26027383 - 26027495
Alignment:
Q  15 aagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaaga 112  Q
    |||||||| | || ||||||||| |||||||| ||||||||  | || |||| ||||||||||| ||| ||| ||||| | ||||||||||||  |||||    
T  26027383 aagtcaacgtcgacgtgtttttggatataataaagcgctatatgtgacaagtgataatgaggatgatgaattcaagtctattaaagattataggaaaaga 26027482  T
Q  113 aaatatctacaga 125  Q
    |||||||| ||||    
T  26027483 aaatatctgcaga 26027495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 49626449 - 49626392
Alignment:
Q  66 ataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatatctaca 123  Q
    ||||||||||||||||||||||||  | ||||||||||||||||| ||| ||||||||    
T  49626449 ataatgaggatcatgtattaaagtttattaaagattatagataaataaagtatctaca 49626392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 28368450 - 28368293
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28368450 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 28368351  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaag 169  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||    
T  28368350 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaag 28368293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 30958992 - 30958833
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30958992 atgaagtcaacgttgatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 30958893  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||| ||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  30958892 aaaatatctacataatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 30958833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 1533136 - 1532975
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||| |||| |||||||||||||||||||||||||||  | ||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  1533136 atgaagtcaacgttgacgtgtttttgcatataatatagcgctatatgtgataaataataatgaggatcatgtgttaaagtcgactaaagattatagataa 1533037  T
Q  110 agaaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaagca 171  Q
    |||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||    
T  1533036 agaaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaagca 1532975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 25105897 - 25105782
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||| ||||| | || ||||||||| |||||||||||||||||  | |||||||||||||||||||||||  || || || | ||||||||||||| ||    
T  25105897 atgaaatcaacgtcgacgtgtttttggatataatatagcgctatatgtgataagtaataatgaggatcatgatttcaaatctattaaagattatagaaaa 25105798  T
Q  110 agaaaatatctacaga 125  Q
    ||||| ||||| ||||    
T  25105797 agaaagtatctgcaga 25105782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 25164990 - 25164875
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||| ||||| | || ||||||||| |||||||||||||||||  | |||||||||||||||||||||||  || || || | ||||||||||||| ||    
T  25164990 atgaaatcaacgtcgacgtgtttttggatataatatagcgctatatgtgataagtaataatgaggatcatgatttcaaatctattaaagattatagaaaa 25164891  T
Q  110 agaaaatatctacaga 125  Q
    ||||| ||||| ||||    
T  25164890 agaaagtatctgcaga 25164875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 18084701 - 18084624
Alignment:
Q  15 aagtcaacattgatgtgtttttgcatataatatagcgctatgc--gataagtaataatgaggatcatgtattaaagtc 90  Q
    |||||||| | || ||||||||| |||||||||||||||||    ||||||||||||||||||||||| ||| |||||    
T  18084701 aagtcaacgtcgacgtgtttttggatataatatagcgctatatatgataagtaataatgaggatcatgaattcaagtc 18084624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 26460714 - 26460681
Alignment:
Q  15 aagtcaacattgatgtgtttttgcatataatata 48  Q
    |||||||||||||||||||||||||||| |||||    
T  26460714 aagtcaacattgatgtgtttttgcatatcatata 26460681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 14851333 - 14851490
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    ||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14851333 atgaagtaaacgtagatgtgtttttgcatataatatagcgctatgtgataagtaataatgaggatcatgtgttaaagtcgactaaagattatagataaag 14851432  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttcatgaag 169  Q
    |||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||    
T  14851433 aaaatatctacagaatggaaagagacaattctactgaaatcaaactcgtttcatgaag 14851490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 19442600 - 19442492
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||||| || ||||||||| |||||||||| | ||||  | ||||||||| ||||||||||||| ||| ||||| | ||||||||||||| ||    
T  19442600 atgaagtcaacatcgacgtgtttttggatataatataacactatatgtgataagtaacaatgaggatcatgaattcaagtctattaaagattatagacaa 19442501  T
Q  110 agaaaatat 118  Q
    |||||||||    
T  19442500 agaaaatat 19442492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 14462168 - 14462086
Alignment:
Q  39 atataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatatct 120  Q
    |||||||||||||||||  | ||||||||||||||| |||||||  |||||||| | ||||||||||||| |||||||||||||    
T  14462168 atataatatagcgctatatgtgataagtaataatgaagatcatgagttaaagtctattaaagattataga-aaagaaaatatct 14462086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 6931792 - 6931909
Alignment:
Q  53 tatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatatctacagaatagaaagagataattctcctgaaatt 152  Q
    |||| |||||||||||||||||||||||  ||||| || | ||||| |||| ||||| |||||||| |||| |  | ||||| | ||||||  ||||||     
T  6931792 tatgtgataagtaataatgaggatcatgagttaaattctattaaag-ttattgataatgaaaatatttacaaatgaaaaagacagaattctagtgaaatc 6931890  T
Q  153 aaactcgtttcatgaagca 171  Q
    ||||||| |||||||||||    
T  6931891 aaactcgcttcatgaagca 6931909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 17271598 - 17271452
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||  |||| ||||||||| |||||||||| ||||||  | | ||||||||||||| ||| | |  |||||||| | |||| |||||||||||    
T  17271598 atgaagtcaatgttgacgtgtttttgtatataatataacgctatatgtggtaagtaataatgatgataagggtttaaagtctattaaa-attatagataa 17271500  T
Q  110 agaaaatatctacagaatagaaagagataattctcctgaaattaaactc 158  Q
     |||||||| |||| |||| ||| ||| ||||||  |||||| ||||||    
T  17271499 tgaaaatatttaca-aataaaaatagacaattctattgaaatcaaactc 17271452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 18583 - 18728
Alignment:
Q  15 aagtcaacattgatgtgtttttgcatataatatagcgctatgc--gataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaaga 112  Q
    |||||||  |||| |||| |||| |||||||||||||||||    ||||||||||||||||||||||| ||| ||||| | ||||||||||||| |||||    
T  18583 aagtcaatgttgacgtgtctttggatataatatagcgctatatctgataagtaataatgaggatcatgaattcaagtctattaaagattatagaaaaaga 18682  T
Q  113 aaatatctacagaatagaaagagataattctcctgaaattaaactcg 159  Q
    |||||||| ||| || |||||||| |||||   |||||| |||||||    
T  18683 aaatatctgcag-atggaaagagacaattccagtgaaatcaaactcg 18728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 28751 - 28896
Alignment:
Q  15 aagtcaacattgatgtgtttttgcatataatatagcgctatgc--gataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaaga 112  Q
    |||||||  |||| |||| |||| |||||||||||||||||    ||||||||||||||||||||||| ||| ||||| | ||||||||||||| |||||    
T  28751 aagtcaatgttgacgtgtctttggatataatatagcgctatatctgataagtaataatgaggatcatgaattcaagtctattaaagattatagaaaaaga 28850  T
Q  113 aaatatctacagaatagaaagagataattctcctgaaattaaactcg 159  Q
    |||||||| ||| || |||||||| |||||   |||||| |||||||    
T  28851 aaatatctgcag-atggaaagagacaattccagtgaaatcaaactcg 28896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 10665 - 10757
Alignment:
Q  30 tgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatatct 120  Q
    ||||||||||||||||||||||||||  | |||  |||||||||||||||||| ||||||||| |  |||||||||||| |||||||||||||    
T  10665 tgtttttgcatataatatagcgctatatgtgattggtaataatgaggatcatgaattaaagtctataaaagattatagaaaaagaaaatatct 10757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 17906318 - 17906464
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||||||  | || ||||||||| |||||||||||||||||  | |||||||||||||||||||||||  |||||||| | ||||| ||||||||||    
T  17906318 atgaagtcaaagtcgacgtgtttttgaatataatatagcgctatatgtgataagtaataatgaggatcatggtttaaagtctattaaag-ttatagataa 17906416  T
Q  110 agaaaatatctacagaatagaaagagataattctcctgaaattaaactc 158  Q
     |||||||| |||| |||  ||||||| ||||||  |||||| ||||||    
T  17906417 tgaaaatatttaca-aatgaaaagagaaaattctattgaaatcaaactc 17906464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 11685609 - 11685526
Alignment:
Q  58 gataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaagaaaatatctacagaatagaaagagataattc 142  Q
    |||||||||||||||||||| ||   | ||||| | |||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  11685609 gataagtaataatgaggatcttgagctgaagtctattaaatattatagataaataaaatatctaca-aatagaaagagataattc 11685526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 29541989 - 29542134
Alignment:
Q  15 aagtcaacattgatg-tgtttttgcatataatatagcgctat--gcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataaag 111  Q
    |||||||| |||||| |||||||||||||||||||| |||||  | |||  || ||||||||||||||| ||||||||| |  |||||||||||| |||     
T  29541989 aagtcaacgttgatgatgtttttgcatataatatagagctatatgtgattggtgataatgaggatcatgaattaaagtctataaaagattataga-aaaa 29542087  T
Q  112 aaaatatctacagaatagaaagagataattctcctgaaattaaactcg 159  Q
    ||||||||| ||| || |||||||| |||||   |||||| |||||||    
T  29542088 aaaatatctgcag-atggaaagagacaattcctgtgaaatcaaactcg 29542134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 10575 - 10727
Alignment:
Q  12 atgaagtcaacattgatgtgtttttgcatataatatagcgc--tatgcgataagtaataatgaggatcatgtattaaagtcgactaaagattatagataa 109  Q
    ||||||| ||| | || ||||||||| ||||||||||||||  |||| ||||||||||||||||||| |||  |||||||| | ||||| | ||||||||    
T  10575 atgaagttaacgtcgacgtgtttttggatataatatagcgctatatgtgataagtaataatgaggataatgagttaaagtctattaaag-tcatagataa 10673  T
Q  110 agaaaatatctacagaatagaaagagataattctcctgaaattaaactcgtttca 164  Q
     |||||||| |||| |||  ||||||| |||||   |||||| ||||||| ||||    
T  10674 tgaaaatatttaca-aatgaaaagagacaattcaagtgaaatcaaactcgcttca 10727  T

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