View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_high_36 (Length: 269)
Name: NF16573_high_36
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_high_36 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 34461789 - 34461550
Alignment:
| Q |
12 |
agcataggacaagacatcttgtggtgtgcaaatgaggatgcttacttggttgaaaaacctaatggacaatgtgtgacagaaaaatgagaataagaatata |
111 |
Q |
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| T |
34461789 |
agcataggacaagacatcttgtggtgtgcaaatgaggatgcttacttggttgaaaaacctaatggacaatgtgtgacagaaaaatgagaataagaatata |
34461690 |
T |
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| Q |
112 |
gttaggagtgtgacatattttagggctaccataaattcactatgagctccataaatggaatcattgagaggcttcttcacactgtatgtgctgcttatca |
211 |
Q |
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| T |
34461689 |
gttaggagtgtgacatattttagggctaccataaattcactatgagctccataaatggaatcattgagaggcttcttcacactgtatgtgctgcttatca |
34461590 |
T |
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| Q |
212 |
ctgctgctaaaccagctgagagaagaatggatgtagttgc |
251 |
Q |
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| T |
34461589 |
ctgctgccaaaccagctgagagaagaatggatgtagttgc |
34461550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 1149722 - 1149848
Alignment:
| Q |
94 |
aatgagaataagaatatagttaggagtgtgacatattttagggctaccataaattcactatgagctccataaatggaatcattgagaggcttcttcacac |
193 |
Q |
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| T |
1149722 |
aatgagaagaggaaaattgtgaggagtgagacatattttagtgcaaccatgaattcaccatgtgctccataaattgcatcatttagtggctttttcacac |
1149821 |
T |
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| Q |
194 |
tgtatgtgctgcttatcactgctgcta |
220 |
Q |
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| T |
1149822 |
tatatgtgctgcttataactgctgcta |
1149848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 21761 - 21638
Alignment:
| Q |
26 |
catcttgtggtgtgcaaatgaggatgcttacttggttgaaaaacctaatggacaatgtgtgacagaaaaatgagaataagaatatagttaggagtgtgac |
125 |
Q |
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| T |
21761 |
catcttgtggtgtgcaaataaggaggcttaattggttgagaaacctaattgaaagagtgtggcagaaaaatgagaataagaatatggtaagaagtgtcac |
21662 |
T |
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| Q |
126 |
atattttagggctaccataaattc |
149 |
Q |
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| T |
21661 |
atattttagggcttccataaattc |
21638 |
T |
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