View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16573_high_39 (Length: 257)
Name: NF16573_high_39
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_high_39 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 8444300 - 8444530
Alignment:
| Q |
19 |
aagttgccttgcaaattgatcaaattattcaaattatagcaggttttttaatgtctaaataattaaatgttatgtacgtcctaaggttaatgtttgaata |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8444300 |
aagttgccttacaaattgatcaaattattcaaattatagcaggttttttaatgtctaaataattaaatgttatgtacgtcctaaggttaatgtttgaata |
8444399 |
T |
|
| Q |
119 |
ataatgaaatgcatctatatctatttacaaataatatatttgagaatcatgtgtcatgtttcacat-gtgggattcaatttcatctttcattaatcagcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8444400 |
ataatgaaatgcatctatatctatttacaaataatatatttgagaatcatgtgtcatgtttcacatggtgggattcaatttcatctttcattaatcagcg |
8444499 |
T |
|
| Q |
218 |
caagactttttgttttgccctctgtctgtgc |
248 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||| |
|
|
| T |
8444500 |
caagattttttgttttgccctttgtttgtgc |
8444530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 8453104 - 8453334
Alignment:
| Q |
19 |
aagttgccttgcaaattgatcaaattattcaaattatagcaggttttttaatgtctaaataattaaatgttatgtacgtcctaaggttaatgtttgaata |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8453104 |
aagttgccttacaaattgatcaaattattcaaattatagcaggttttttaatgtctaaataattaaatgttatgtacgtcctaaggttaatgtttgaata |
8453203 |
T |
|
| Q |
119 |
ataatgaaatgcatctatatctatttacaaataatatatttgagaatcatgtgtcatgtttcacat-gtgggattcaatttcatctttcattaatcagcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8453204 |
ataatgaaatgcatctatatctatttacaaataatatatttgagaatcatgtgtcatgtttcacatggtgggattcaatttcatctttcattaatcagcg |
8453303 |
T |
|
| Q |
218 |
caagactttttgttttgccctctgtctgtgc |
248 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||| |
|
|
| T |
8453304 |
caagattttttgttttgccctttgtttgtgc |
8453334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 8436640 - 8436854
Alignment:
| Q |
19 |
aagttgccttgcaaattgatcaaattattcaaattatagcaggttttttaatgtctaaataattaaat-gttatgtacgtcctaaggttaatgtttgaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||| |
|
|
| T |
8436640 |
aagttgccttgcaaattgatcaaattattcaaattatagcagtttttttaatgtctaattaattaaatggttatg-acgtcctaaggttaacgtttgaat |
8436738 |
T |
|
| Q |
118 |
aataatgaaatgcatcta----tatctatttacaaataatatatttgagaatcatgtgtcatgtttcacat-gtgggattcaatttcatctttcattaat |
212 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
8436739 |
aataatgaaatgcatctatatttatttatttacaaataatatatttgagaatcatgtgtcatgtttcacatggtggtattcaattccatctttcattaat |
8436838 |
T |
|
| Q |
213 |
cagcgcaagactttttg |
229 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
8436839 |
cagctcaa-actttttg |
8436854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University