View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16573_high_45 (Length: 238)

Name: NF16573_high_45
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16573_high_45
NF16573_high_45
[»] chr6 (8 HSPs)
chr6 (72-159)||(14043200-14043287)
chr6 (81-159)||(13929019-13929097)
chr6 (156-222)||(14043309-14043375)
chr6 (13-77)||(14042782-14042846)
chr6 (156-222)||(13929119-13929185)
chr6 (100-153)||(13898965-13899018)
chr6 (17-76)||(14081651-14081710)
chr6 (100-142)||(14012977-14013019)
[»] scaffold0004 (1 HSPs)
scaffold0004 (158-225)||(89547-89614)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 14043200 - 14043287
Alignment:
Q  72 tatacaaacctagaacttcttgatattattgcagggtggatttgtcaggaaaataattgttcaagaatttgtcaaggtatttgctttc 159  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14043200 tatacaaacctataacttcttgatattattgcagggtggatttgtgaggaaaataattgttcaagaatttgtcaaggtatttgctttc 14043287  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 13929019 - 13929097
Alignment:
Q  81 ctagaacttcttgatattattgcagggtggatttgtcaggaaaataattgttcaagaatttgtcaaggtatttgctttc 159  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13929019 ctagaacttcttgatattattgcagggtggatttgtgaggaaaataattgttcaagaatttgtcaaggtatttgctttc 13929097  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 14043309 - 14043375
Alignment:
Q  156 tttctcccccgtgccatccatgtgaccctgtacgaaatgtgcacccgtttgactaaccggtgttact 222  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14043309 tttctcccccgtgccatccatgtgaccctgtacgaaatgtccacccgtttgactaaccggtgttact 14043375  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 14042782 - 14042846
Alignment:
Q  13 cagagaaaataaacggtggatgaaaataagaacacgaaatgatgtgtaaaattgggatgtataca 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14042782 cagagaaaataaacggtggatgaaaataagaacacgaaatgatgtgtaaaattggcatgtataca 14042846  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 13929119 - 13929185
Alignment:
Q  156 tttctcccccgtgccatccatgtgaccctgtacgaaatgtgcacccgtttgactaaccggtgttact 222  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||    
T  13929119 tttctcccccgtgccatccatgtgaccctgtacgaaatgtccacccgtttgactaatctgtgttact 13929185  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 13899018 - 13898965
Alignment:
Q  100 ttgcagggtggatttgtcaggaaaataattgttcaagaatttgtcaaggtattt 153  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  13899018 ttgcagggtggatttgtgaggaaaataattgttcaagaatttgccaaggtattt 13898965  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 14081651 - 14081710
Alignment:
Q  17 gaaaataaacggtggatgaaaataagaacacgaaatgatgtgtaaaattgggatgtatac 76  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  14081651 gaaaataaatggtggatgaaaataagaacatgagatgatgtgtaaaattggcatgtatac 14081710  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 14013019 - 14012977
Alignment:
Q  100 ttgcagggtggatttgtcaggaaaataattgttcaagaatttg 142  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||    
T  14013019 ttgcaggatggatttgtcaggaaattaattgttcaataatttg 14012977  T

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Target: scaffold0004 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 89614 - 89547
Alignment:
Q  158 tctcccccgtgccatccatgtgaccctgtacgaaatgtgcacccgtttgactaaccggtgttactgat 225  Q
    |||||||||||||||||| ||||||||||||||||||  ||||| || || |||||||||||||||||    
T  89614 tctcccccgtgccatccacgtgaccctgtacgaaatgcccacccattcgagtaaccggtgttactgat 89547  T

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