View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16573_high_5 (Length: 493)

Name: NF16573_high_5
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16573_high_5
NF16573_high_5
[»] chr6 (13 HSPs)
chr6 (1-208)||(12949456-12949663)
chr6 (1-215)||(12908027-12908242)
chr6 (1-181)||(18555921-18556102)
chr6 (1-215)||(12933116-12933331)
chr6 (14-181)||(12958928-12959096)
chr6 (305-451)||(12900818-12900966)
chr6 (285-480)||(12959330-12959520)
chr6 (282-451)||(12949869-12950039)
chr6 (285-451)||(18556321-18556481)
chr6 (272-365)||(12933496-12933588)
chr6 (272-365)||(12908417-12908509)
chr6 (46-93)||(12900431-12900478)
chr6 (124-188)||(12900482-12900546)
[»] chr2 (2 HSPs)
chr2 (1-210)||(17922557-17922769)
chr2 (282-451)||(17922187-17922355)
[»] chr5 (6 HSPs)
chr5 (9-134)||(10612576-10612698)
chr5 (12-128)||(10565870-10565985)
chr5 (16-92)||(10716248-10716324)
chr5 (12-128)||(10581862-10581977)
chr5 (9-64)||(10746321-10746376)
chr5 (403-451)||(20526497-20526545)
[»] chr4 (1 HSPs)
chr4 (403-448)||(6151907-6151952)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 12949456 - 12949663
Alignment:
Q  1 tgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttattatcttattgtgcatttcaaaattccc 100  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||     
T  12949456 tgatattcttatatgcttatttgaatcataaccaactcattaattgcttatgaaattagaattttatttttatcatcttattgtgcatttcaaaattcct 12949555  T
Q  101 aaactacaaaatataatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaaatcatttgtggaaagagaagttatgcaacat 200  Q
    | ||||||||||||||||||| ||||| ||||||  |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||    
T  12949556 agactacaaaatataatggtaataatgaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaagttatgcagcat 12949655  T
Q  201 aatgtact 208  Q
    ||||||||    
T  12949656 aatgtact 12949663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 12908027 - 12908242
Alignment:
Q  1 tgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttattatcttattgtgcatttcaaaattccc 100  Q
    |||||||| ||||| |||||| ||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||||    
T  12908027 tgatattcctatatctttattagaatcataactacgtcattaattgcttatggaattagagttttatttttatcatcttattttgtatttcaaaattccc 12908126  T
Q  101 aaactacaaaatataatggtattaatggccttctgtattttaatttca-ggtcatgaacaaaatttctaaatcatttgtggaaagagaagttatgcaaca 199  Q
    ||||||||||||||||||||| ||||| ||||||  |||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |||||| ||    
T  12908127 aaactacaaaatataatggtaataatgaccttcttgattttaatttcagggtcttgaacaaaatttctaagtcatttgtggaaagagaagatatgcagca 12908226  T
Q  200 taatgtactttagtta 215  Q
    ||| ||||||| ||||    
T  12908227 taacgtactttggtta 12908242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 18555921 - 18556102
Alignment:
Q  1 tgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttattatcttattgtgcatttcaaaattccc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18555921 tgatattcttataagtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattccc 18556020  T
Q  101 aaactacaaaatataatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaaatc-atttgtgga 181  Q
    ||||||||||||||||||||| ||||  ||||||  |||||||||||||||  ||||||| |||||||| || |||||||||    
T  18556021 aaactacaaaatataatggtaataattaccttcttgattttaatttcaggttttgaacaatatttctaagtcaatttgtgga 18556102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 12933116 - 12933331
Alignment:
Q  1 tgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttattatcttattgtgcatttcaaaattccc 100  Q
    |||||||| ||||| |||||| ||||||||||||  |||||||||||||| ||||||||| |||||||||||| |||||||| || ||||||||||||||    
T  12933116 tgatattcctatatctttattagaatcataactacgtcattaattgcttaaggaattagagttttatttttatcatcttattttgtatttcaaaattccc 12933215  T
Q  101 aaactacaaaatataatggtattaatggccttctgtattttaatttca-ggtcatgaacaaaatttctaaatcatttgtggaaagagaagttatgcaaca 199  Q
    ||||||||||||||||||||| ||||| ||||||  |||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |||||| ||    
T  12933216 aaactacaaaatataatggtaataatgaccttcttgattttaatttcagggtcttgaacaaaatttctaagtcatttgtggaaagagaagatatgcagca 12933315  T
Q  200 taatgtactttagtta 215  Q
    ||| ||||||| ||||    
T  12933316 taacgtactttggtta 12933331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 12958928 - 12959096
Alignment:
Q  14 tgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttattatcttattgtgcatttcaaaattcccaaactacaaaata 113  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  12958928 tgtttatttgaatcataactaactcattaattggttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactataaaata 12959027  T
Q  114 taatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaaatc-atttgtgga 181  Q
    |||||||| ||||| ||||||  |||||||||||||||  |||||||||||||||| || |||||||||    
T  12959028 taatggtaataatgaccttcttgattttaatttcaggttttgaacaaaatttctaagtcaatttgtgga 12959096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 305 - 451
Target Start/End: Original strand, 12900818 - 12900966
Alignment:
Q  305 taaactttgtttgcacaaataaaacaacaaacatttcattgtcaaatgattttacttcttactatattactagatatgaatg---agttacttccttggc 401  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||   ||||||||||| |||    
T  12900818 taaactttgtttgcccaaataaaagaacaaacatttcattgtgaaatgattttacttcttagtgtattactacatatgaatgatcagttacttcctaggc 12900917  T
Q  402 agttagaatcaaacttaattttaaactctaaagtcaatcatgttaatcat 451  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  12900918 agttagaatcaaacttaattttaaactc-aaaatcaatcatgttaatcat 12900966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 285 - 480
Target Start/End: Original strand, 12959330 - 12959520
Alignment:
Q  285 tgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaacatttcattgtcaaatgattttacttcttactatattactagatatgaa 384  Q
    |||| |||||||||| |||||||| | | ||||| |||||||||||| |||||||||||||| ||||||||||||||||||     |||||| |||||||    
T  12959330 tgttcaattcctaagtatcttaaaatatatttgcccaaataaaacaataaacatttcattgtgaaatgattttacttctta-----ttactaaatatgaa 12959424  T
Q  385 tgagttacttccttggcagttagaatcaaacttaattttaaactctaaagtcaatcatgttaatcatnnnnnnnngttgatcaatatgcataagtg 480  Q
    |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||        || ||||||||||||||||||    
T  12959425 tgagttacttacttcgcagttagaatcgaacttaattttaaactctaaagtcaataatgttaatcataaaaaatagtagatcaatatgcataagtg 12959520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 282 - 451
Target Start/End: Original strand, 12949869 - 12950039
Alignment:
Q  282 atgtgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaacatttcattgtcaaatgattttacttcttactatattactagatat 381  Q
    ||||||||||||| |||| || ||||||||||||||| ||||||||||||||| || |||||| | |||||||||||||||||  ||||||| || ||||    
T  12949869 atgtgtttaattcataagtatattaaactttgtttgcccaaataaaacaacaatcaattcatt-tgaaatgattttacttcttggtatattattacatat 12949967  T
Q  382 gaatga---gttacttccttggcagttagaatcaaacttaattttaaactctaaagtcaatcatgttaatcat 451  Q
    ||||||   |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  12949968 gaatgatcagttacttccttggcagttagaatcaaacttaattttaaactc-aaaatcaatcatgttaatcat 12950039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 285 - 451
Target Start/End: Original strand, 18556321 - 18556481
Alignment:
Q  285 tgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaacatttcattgtcaaatgattttacttcttactatattactagatatgaa 384  Q
    |||| |||||||||| ||||||||   ||||||| ||||| |  ||| |||||||||||||| ||||||||||||||||||     ||||||||||||||    
T  18556321 tgttcaattcctaagtatcttaaaacatgtttgcccaaattag-caataaacatttcattgtgaaatgattttacttctta-----ttactagatatgaa 18556414  T
Q  385 tgagttacttccttggcagttagaatcaaacttaattttaaactctaaagtcaatcatgttaatcat 451  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  18556415 tgagttacttgcatggcagttagaatcaaacttaattttaaattctaaagtcaataatgttaatcat 18556481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 12933496 - 12933588
Alignment:
Q  272 ttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaacatttcattgtcaaatgattttacttctta 365  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||| | |||||| |||| ||| || |||||||||||||||    
T  12933496 ttattaaaatatgtgttcaattcctaagtatcttaaactttgtttgcccaaataaaaaagcaaacaattca-tgtgaactgattttacttctta 12933588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 12908417 - 12908509
Alignment:
Q  272 ttattaaactatgtgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaacatttcattgtcaaatgattttacttctta 365  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||| ||||||||| | |||||| || | ||| || |||||||||||||||    
T  12908417 ttattaaaatatgtgttcaattcctaagtatcttaaactttgtttgcccaaataaaaaagcaaacaattta-tgtgaactgattttacttctta 12908509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 12900431 - 12900478
Alignment:
Q  46 gcttatggaattagaattttatttttattatcttattgtgcatttcaa 93  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  12900431 gcttatggaattagaattttatttttatcatcttgttgtgcatttcaa 12900478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 12900482 - 12900546
Alignment:
Q  124 aatggccttctgtattttaatttcaggtcatgaacaaaatttctaaatcatttgtggaaagagaa 188  Q
    |||| ||||||  |||||||||||||||| |||||||||||||||| || |||||| ||||||||    
T  12900482 aatgaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcgtttgtgcaaagagaa 12900546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 17922769 - 17922557
Alignment:
Q  1 tgatattcttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttattatcttattgt---gcatttcaaaatt 97  Q
    ||||||||||||| ||||||||  |||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| ||||   |||||||||||||    
T  17922769 tgatattcttataagtttatttcgatcataaccaacgcattaattgcttatggaattagaattttattttaatcatcttgttgttgtgcatttcaaaatt 17922670  T
Q  98 cccaaactacaaaatataatggtattaatggccttctgtattttaatttcaggtcatgaacaaaatttctaaatcatttgtggaaagagaagttatgcaa 197  Q
    |||||||||||||||||||||||| ||||  ||||||  |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||     
T  17922669 cccaaactacaaaatataatggtaataataaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaagttatgcag 17922570  T
Q  198 cataatgtacttt 210  Q
    |||||||||||||    
T  17922569 cataatgtacttt 17922557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 282 - 451
Target Start/End: Complemental strand, 17922355 - 17922187
Alignment:
Q  282 atgtgtttaattcctaagcatcttaaactttgtttgcacaaataaaacaacaaacatttcattgtcaaatgattttacttcttactatattactagatat 381  Q
    ||||||||||||| |||| || ||||||||||||||| ||||||||||||||| || ||||| || |||||||||||||||||| |||||||| ||||||    
T  17922355 atgtgtttaattcataagtatattaaactttgtttgcccaaataaaacaacaatcaattcat-gtgaaatgattttacttcttagtatattaccagatat 17922257  T
Q  382 gaatgagttacttccttggcagttagaatcaaacttaattttaaactctaaagtcaatcatgttaatcat 451  Q
    |||||||||||||||||| | |||||||||||||| |||||||| | ||| |||||||| ||||||||||    
T  17922256 gaatgagttacttccttgactgttagaatcaaactcaattttaatccctagagtcaatcttgttaatcat 17922187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 10612576 - 10612698
Alignment:
Q  9 ttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttattatcttattgtgcatttcaaaattcccaaactaca 108  Q
    |||||| |||||||||||||||||||||||| |||||| ||||||| |   ||||| |||||||| |||||||||||||||||||| |||| ||||| ||    
T  10612576 ttatatatttatttgaatcataactaactcaataattgtttatggact---aatttgatttttatcatcttattgtgcatttcaaatttcctaaacttca 10612672  T
Q  109 aaatataatggtattaatggccttct 134  Q
    ||||||||| ||| ||||||||||||    
T  10612673 aaatataatagtaataatggccttct 10612698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 10565870 - 10565985
Alignment:
Q  12 tatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttattatcttattgtgcatttcaaaattcccaaactacaaaa 111  Q
    ||||| |||| ||||||||||||| |||||| ||| ||||||| |||  |||| |||||||||||| |||| ||||||| |||||||| |||||||||||    
T  10565870 tatgtgtattcgaatcataactaaatcattatttggttatggagttatcatttgatttttattatcatattttgcattt-aaaattcctaaactacaaaa 10565968  T
Q  112 tataatggtattaatgg 128  Q
    || ||||||| ||||||    
T  10565969 tacaatggtaataatgg 10565985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 10716324 - 10716248
Alignment:
Q  16 tttatttgaatcataactaactcattaattgcttatggaattagaattttatttttattatcttattgtgcatttca 92  Q
    ||||||||||| |||||||||||  |||||||||||||||||| ||||| || ||||| ||||||||||||||||||    
T  10716324 tttatttgaataataactaactctataattgcttatggaattataatttgatctttatcatcttattgtgcatttca 10716248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 10581862 - 10581977
Alignment:
Q  12 tatgtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttattatcttattgtgcatttcaaaattcccaaactacaaaa 111  Q
    ||||| |||| ||||||||||||| |||||| ||| ||||||| |||  |||| |||||||||||| |||| ||||||| || ||||| ||||| |||||    
T  10581862 tatgtgtattcgaatcataactaaatcattatttggttatggagttatcatttgatttttattatcatattttgcattt-aatattcctaaacttcaaaa 10581960  T
Q  112 tataatggtattaatgg 128  Q
    || ||||||| ||||||    
T  10581961 tacaatggtaataatgg 10581977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 10746376 - 10746321
Alignment:
Q  9 ttatatgtttatttgaatcataactaactcattaattgcttatggaattagaattt 64  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||    
T  10746376 ttatatgcttatttgaatcataactaactcattaattgcttatgcaattataattt 10746321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 451
Target Start/End: Complemental strand, 20526545 - 20526497
Alignment:
Q  403 gttagaatcaaacttaattttaaactctaaagtcaatcatgttaatcat 451  Q
    ||||||| ||||||| ||||||||||||| | |||||||||||||||||    
T  20526545 gttagaaacaaacttgattttaaactctagattcaatcatgttaatcat 20526497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 6151907 - 6151952
Alignment:
Q  403 gttagaatcaaacttaattttaaactctaaagtcaatcatgttaat 448  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||    
T  6151907 gttagaaccaaacttaattttaaaccttaaagtcaatcatgttaat 6151952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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