View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16573_high_54 (Length: 204)

Name: NF16573_high_54
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16573_high_54
NF16573_high_54
[»] chr5 (24 HSPs)
chr5 (14-92)||(21210828-21210906)
chr5 (14-62)||(39195757-39195805)
chr5 (14-87)||(16972083-16972155)
chr5 (30-87)||(33567223-33567280)
chr5 (35-87)||(13734365-13734417)
chr5 (35-87)||(14206403-14206455)
chr5 (36-87)||(6865793-6865844)
chr5 (35-87)||(1839349-1839401)
chr5 (43-87)||(31683508-31683552)
chr5 (35-87)||(33910093-33910145)
chr5 (14-82)||(35649971-35650039)
chr5 (35-87)||(39458671-39458723)
chr5 (14-62)||(40364608-40364656)
chr5 (35-86)||(29227721-29227772)
chr5 (16-87)||(30334752-30334823)
chr5 (37-87)||(14923086-14923135)
chr5 (13-87)||(34270342-34270415)
chr5 (14-60)||(42446274-42446320)
chr5 (35-87)||(4434485-4434537)
chr5 (35-87)||(8725427-8725479)
chr5 (35-87)||(9226316-9226368)
chr5 (14-62)||(11954471-11954519)
chr5 (14-62)||(22098295-22098343)
chr5 (14-62)||(36738987-36739035)
[»] chr1 (44 HSPs)
chr1 (14-87)||(4857925-4857998)
chr1 (14-62)||(40439823-40439871)
chr1 (16-92)||(5477149-5477225)
chr1 (16-62)||(27742657-27742703)
chr1 (14-62)||(4213112-4213160)
chr1 (14-62)||(17082726-17082774)
chr1 (35-87)||(45272165-45272217)
chr1 (14-87)||(14983787-14983860)
chr1 (15-87)||(33358143-33358215)
chr1 (22-62)||(38878892-38878932)
chr1 (35-87)||(49241509-49241561)
chr1 (35-87)||(49453494-49453546)
chr1 (43-87)||(51571418-51571462)
chr1 (35-92)||(40139124-40139181)
chr1 (35-92)||(41507199-41507256)
chr1 (14-87)||(48220128-48220200)
chr1 (35-92)||(48872033-48872090)
chr1 (35-87)||(5975551-5975603)
chr1 (42-94)||(6143691-6143743)
chr1 (14-62)||(7919045-7919093)
chr1 (35-87)||(8200090-8200142)
chr1 (35-95)||(18336153-18336213)
chr1 (35-87)||(19969566-19969618)
chr1 (35-87)||(40596059-40596111)
chr1 (35-87)||(43612085-43612137)
chr1 (35-87)||(50781574-50781626)
chr1 (14-65)||(33100844-33100895)
chr1 (36-87)||(45065907-45065958)
chr1 (14-92)||(51718610-51718689)
chr1 (53-87)||(48858826-48858860)
chr1 (42-87)||(29264018-29264063)
chr1 (42-91)||(36494474-36494523)
chr1 (30-87)||(37690432-37690489)
chr1 (14-87)||(44632543-44632615)
chr1 (14-62)||(649808-649856)
chr1 (14-62)||(5771731-5771779)
chr1 (35-87)||(11121495-11121547)
chr1 (35-87)||(27687524-27687576)
chr1 (43-87)||(29293962-29294006)
chr1 (14-62)||(30735277-30735325)
chr1 (14-62)||(35369739-35369787)
chr1 (35-87)||(47398456-47398508)
chr1 (18-62)||(48983655-48983699)
chr1 (14-62)||(49660219-49660267)
[»] chr4 (42 HSPs)
chr4 (16-87)||(48494898-48494969)
chr4 (14-87)||(5386387-5386460)
chr4 (14-87)||(42490923-42490996)
chr4 (14-58)||(29227226-29227270)
chr4 (14-87)||(2109446-2109519)
chr4 (14-62)||(36130336-36130384)
chr4 (14-55)||(26600182-26600223)
chr4 (18-62)||(39158145-39158189)
chr4 (14-87)||(28657425-28657497)
chr4 (30-87)||(46173553-46173610)
chr4 (14-82)||(19232117-19232185)
chr4 (35-87)||(31657661-31657713)
chr4 (14-62)||(38519833-38519881)
chr4 (35-87)||(39241306-39241358)
chr4 (35-87)||(39605982-39606033)
chr4 (35-87)||(43769726-43769778)
chr4 (35-87)||(48326555-48326607)
chr4 (14-62)||(51255786-51255834)
chr4 (53-92)||(44925164-44925203)
chr4 (53-87)||(5932798-5932832)
chr4 (17-87)||(22072263-22072333)
chr4 (35-93)||(24310526-24310584)
chr4 (32-62)||(32012936-32012966)
chr4 (35-92)||(4974109-4974166)
chr4 (43-92)||(32365680-32365729)
chr4 (14-87)||(32621641-32621714)
chr4 (46-87)||(41119497-41119538)
chr4 (14-55)||(52204897-52204938)
chr4 (14-62)||(149468-149516)
chr4 (35-87)||(4511828-4511880)
chr4 (14-62)||(5249908-5249956)
chr4 (50-94)||(10147089-10147133)
chr4 (14-62)||(10250499-10250547)
chr4 (14-62)||(24509371-24509419)
chr4 (35-87)||(26718383-26718435)
chr4 (35-87)||(26731011-26731063)
chr4 (35-87)||(28676157-28676209)
chr4 (35-87)||(30778269-30778321)
chr4 (35-87)||(30973600-30973652)
chr4 (14-58)||(43175027-43175071)
chr4 (14-62)||(44257713-44257761)
chr4 (14-82)||(51930846-51930914)
[»] chr6 (17 HSPs)
chr6 (13-62)||(33712360-33712409)
chr6 (14-62)||(18065073-18065121)
chr6 (35-87)||(31517185-31517237)
chr6 (35-94)||(32644619-32644678)
chr6 (14-87)||(12588365-12588438)
chr6 (35-87)||(1196061-1196113)
chr6 (14-62)||(8645348-8645396)
chr6 (14-62)||(11635518-11635566)
chr6 (36-87)||(12441541-12441592)
chr6 (37-87)||(2241825-2241875)
chr6 (42-87)||(28748127-28748172)
chr6 (42-87)||(32149503-32149548)
chr6 (35-87)||(2060638-2060690)
chr6 (14-62)||(5080551-5080599)
chr6 (14-62)||(10335590-10335638)
chr6 (14-62)||(13423008-13423056)
chr6 (14-62)||(25811822-25811870)
[»] scaffold0110 (1 HSPs)
scaffold0110 (14-62)||(28310-28358)
[»] chr8 (44 HSPs)
chr8 (14-62)||(1068646-1068694)
chr8 (13-62)||(33107849-33107898)
chr8 (14-62)||(44090926-44090974)
chr8 (14-87)||(5740769-5740842)
chr8 (14-87)||(39211056-39211129)
chr8 (14-62)||(15716959-15717007)
chr8 (14-62)||(34435720-34435768)
chr8 (44-92)||(9047084-9047132)
chr8 (14-62)||(33451547-33451594)
chr8 (35-87)||(37392133-37392185)
chr8 (14-87)||(30439490-30439562)
chr8 (35-87)||(1796499-1796551)
chr8 (43-87)||(5502374-5502418)
chr8 (15-87)||(32020450-32020522)
chr8 (35-94)||(38174238-38174298)
chr8 (35-87)||(42768127-42768179)
chr8 (35-87)||(44103779-44103831)
chr8 (35-90)||(14710898-14710953)
chr8 (36-87)||(18538389-18538440)
chr8 (49-87)||(895937-895975)
chr8 (53-87)||(2730995-2731029)
chr8 (13-91)||(28646682-28646760)
chr8 (13-91)||(28651266-28651344)
chr8 (53-87)||(33107901-33107935)
chr8 (53-87)||(34435771-34435805)
chr8 (16-58)||(42652639-42652681)
chr8 (35-68)||(426134-426167)
chr8 (35-92)||(1370290-1370347)
chr8 (53-94)||(5601021-5601062)
chr8 (53-94)||(5639558-5639599)
chr8 (14-87)||(9630138-9630211)
chr8 (35-68)||(21418597-21418630)
chr8 (42-90)||(157067-157115)
chr8 (35-87)||(324099-324151)
chr8 (35-87)||(6968237-6968289)
chr8 (35-87)||(7325729-7325781)
chr8 (35-63)||(11223864-11223892)
chr8 (14-62)||(25830229-25830277)
chr8 (14-62)||(35067200-35067248)
chr8 (35-87)||(37524433-37524485)
chr8 (14-62)||(38675643-38675691)
chr8 (35-87)||(41541872-41541924)
chr8 (42-90)||(42658645-42658693)
chr8 (14-62)||(43715914-43715962)
[»] chr7 (38 HSPs)
chr7 (14-62)||(2008841-2008889)
chr7 (14-62)||(43081873-43081921)
chr7 (33-87)||(2469706-2469760)
chr7 (14-87)||(31785454-31785528)
chr7 (30-87)||(22330631-22330688)
chr7 (13-62)||(33845082-33845131)
chr7 (30-87)||(37351990-37352047)
chr7 (14-87)||(45420044-45420117)
chr7 (15-62)||(32777691-32777738)
chr7 (42-92)||(8459612-8459662)
chr7 (14-62)||(15325623-15325669)
chr7 (14-87)||(26749020-26749092)
chr7 (42-87)||(43444638-43444683)
chr7 (14-87)||(43942652-43942724)
chr7 (35-87)||(7817652-7817704)
chr7 (14-62)||(13152632-13152680)
chr7 (14-62)||(17945107-17945155)
chr7 (35-87)||(21839138-21839190)
chr7 (14-62)||(34978336-34978384)
chr7 (16-87)||(41989728-41989798)
chr7 (53-87)||(2008892-2008926)
chr7 (37-87)||(25887597-25887647)
chr7 (30-87)||(41985100-41985157)
chr7 (14-55)||(46880949-46880990)
chr7 (14-87)||(47078235-47078307)
chr7 (14-87)||(47684177-47684249)
chr7 (35-87)||(3062345-3062397)
chr7 (35-87)||(3937126-3937178)
chr7 (35-87)||(11352978-11353030)
chr7 (14-62)||(12007169-12007217)
chr7 (35-95)||(27866542-27866602)
chr7 (14-62)||(30941425-30941473)
chr7 (35-87)||(38547295-38547347)
chr7 (43-87)||(39875822-39875866)
chr7 (35-87)||(41254790-41254842)
chr7 (35-87)||(43213322-43213374)
chr7 (18-62)||(43807800-43807844)
chr7 (14-62)||(47448866-47448914)
[»] chr2 (37 HSPs)
chr2 (14-62)||(19916695-19916743)
chr2 (14-62)||(37316798-37316846)
chr2 (14-62)||(11965833-11965881)
chr2 (14-62)||(37731183-37731231)
chr2 (16-62)||(37003650-37003696)
chr2 (14-58)||(8847531-8847575)
chr2 (14-54)||(30831802-30831842)
chr2 (35-87)||(42081051-42081103)
chr2 (36-90)||(32972912-32972966)
chr2 (14-87)||(37737961-37738033)
chr2 (43-87)||(8482245-8482289)
chr2 (14-62)||(9207629-9207677)
chr2 (36-87)||(6646838-6646889)
chr2 (35-90)||(30996739-30996794)
chr2 (43-93)||(10216861-10216911)
chr2 (14-60)||(18510717-18510763)
chr2 (53-87)||(37731234-37731268)
chr2 (14-88)||(42372493-42372567)
chr2 (42-87)||(3012857-3012902)
chr2 (18-87)||(7485462-7485531)
chr2 (14-87)||(9647147-9647219)
chr2 (35-92)||(25801818-25801875)
chr2 (42-87)||(28013970-28014015)
chr2 (14-87)||(42678764-42678836)
chr2 (42-87)||(44422981-44423026)
chr2 (14-62)||(8427592-8427640)
chr2 (14-62)||(9760057-9760105)
chr2 (14-62)||(14876997-14877045)
chr2 (14-62)||(18254193-18254241)
chr2 (47-87)||(19695708-19695748)
chr2 (35-87)||(23352909-23352961)
chr2 (47-87)||(27695975-27696014)
chr2 (14-62)||(29449251-29449299)
chr2 (35-87)||(29795450-29795502)
chr2 (35-87)||(38600828-38600880)
chr2 (35-87)||(43725219-43725271)
chr2 (43-87)||(45202145-45202189)
[»] scaffold0618 (1 HSPs)
scaffold0618 (14-62)||(8936-8984)
[»] chr3 (36 HSPs)
chr3 (14-87)||(28700475-28700548)
chr3 (16-62)||(32362973-32363019)
chr3 (14-94)||(9719436-9719516)
chr3 (14-87)||(55361217-55361290)
chr3 (18-62)||(34307528-34307572)
chr3 (33-87)||(47683804-47683858)
chr3 (14-87)||(49761322-49761394)
chr3 (14-62)||(288765-288813)
chr3 (14-62)||(5244268-5244316)
chr3 (14-62)||(27168665-27168713)
chr3 (35-87)||(35554120-35554172)
chr3 (14-62)||(35597201-35597249)
chr3 (35-87)||(46952952-46953004)
chr3 (35-87)||(48490518-48490570)
chr3 (14-60)||(25188448-25188494)
chr3 (14-87)||(35377065-35377139)
chr3 (35-68)||(14207408-14207441)
chr3 (35-68)||(14215156-14215189)
chr3 (53-94)||(38910622-38910663)
chr3 (14-55)||(41443174-41443215)
chr3 (30-87)||(43169753-43169810)
chr3 (14-87)||(53871016-53871089)
chr3 (14-62)||(10811175-10811223)
chr3 (16-87)||(23585131-23585200)
chr3 (16-87)||(23599954-23600023)
chr3 (35-87)||(24645371-24645423)
chr3 (14-62)||(26014851-26014899)
chr3 (35-87)||(29057662-29057714)
chr3 (35-87)||(29846896-29846948)
chr3 (35-87)||(31997816-31997868)
chr3 (43-87)||(32687973-32688017)
chr3 (14-62)||(38926667-38926715)
chr3 (14-62)||(41505530-41505578)
chr3 (14-62)||(49167790-49167838)
chr3 (14-62)||(52254122-52254170)
chr3 (14-90)||(55322700-55322776)
[»] scaffold0432 (1 HSPs)
scaffold0432 (14-62)||(6503-6551)
[»] scaffold0201 (1 HSPs)
scaffold0201 (18-62)||(8512-8556)
[»] scaffold0054 (1 HSPs)
scaffold0054 (35-87)||(31605-31657)
[»] scaffold0034 (1 HSPs)
scaffold0034 (14-62)||(101889-101937)
[»] scaffold0194 (1 HSPs)
scaffold0194 (32-87)||(29774-29829)
[»] scaffold0155 (1 HSPs)
scaffold0155 (36-87)||(3277-3328)
[»] scaffold0019 (1 HSPs)
scaffold0019 (42-89)||(71600-71647)
[»] scaffold0100 (1 HSPs)
scaffold0100 (42-87)||(44789-44834)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 21210906 - 21210828
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  21210906 agagagagaaagtagaagaataatgtgtgtatgagagagaaagttgtcaaaaagtggttgttcaaatatcatttttcat 21210828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 39195805 - 39195757
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39195805 agagagagaaagtagaagaacaatgtctgtatgagagagaaagttgtca 39195757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 16972083 - 16972155
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||||||||||||   |||||||||||| ||||| ||||  |||||||| |||||||||||    
T  16972083 agagagagaaagtagaagaacaatgtaaatatgagagagaaggttgt-aaaaaatggttgttaaaatatcattt 16972155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 33567223 - 33567280
Alignment:
Q  30 agaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||| |||||| ||||||||||||||||||||| || |||||||| ||||||||||||    
T  33567223 agaataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 33567280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 13734365 - 13734417
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| || |||||||| ||||||||||||    
T  13734365 aatgtgagtatgagagagaaagttgtcataaagtggttgtacaaatatcattt 13734417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 14206455 - 14206403
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||||||  ||||||| ||||||||||||    
T  14206455 aatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcattt 14206403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 6865793 - 6865844
Alignment:
Q  36 atgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||| ||||||||||||||||||||| || |||||||| ||||||||||||    
T  6865793 atgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 6865844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 1839349 - 1839401
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  1839349 aatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 1839401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 31683508 - 31683552
Alignment:
Q  43 tatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||    
T  31683508 tatgagagagaaagttatcaaaaagtggttgttcaaatgtcattt 31683552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 33910093 - 33910145
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||||||  ||||||  ||||||||||||    
T  33910093 aatgtgagtatgagagagaaagttgtcaaaaaatggttgaacaaatatcattt 33910145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 35649971 - 35650039
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatat 82  Q
    |||||||||||||| ||  | |||||| |||||||||| |||||||||||||  | |||||||||||||    
T  35649971 agagagagaaagtaaaaacataatgtgagtatgagagaaaaagttgtcaaaaaatagttgttcaaatat 35650039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 39458723 - 39458671
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||||||  ||||||| || |||||||||    
T  39458723 aatgtgagtatgagagagaaagttgtcaaaaactggttgtacagatatcattt 39458671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 40364656 - 40364608
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||  | |||||| |||||||||||||||||||||    
T  40364656 agagagagaaagtagaaatataatgtgagtatgagagagaaagttgtca 40364608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 29227772 - 29227721
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatt 86  Q
    |||||| ||||||||||||||||||||| || || ||||| |||||||||||    
T  29227772 aatgtgagtatgagagagaaagttgtcacaaagtagttgtacaaatatcatt 29227721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 30334752 - 30334823
Alignment:
Q  16 agagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||| || ||| | |||||| |||||| ||||||| |||||| || |||||||| ||||||||||||    
T  30334752 agagagaaaataaaagtataatgtgagtatgaaagagaaaattgtcataaagtggttgtacaaatatcattt 30334823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 14923135 - 14923086
Alignment:
Q  37 tgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||| ||||||||||||||||||| ||||  ||||||||||||||||||||    
T  14923135 tgtgagtatgagagagaaagttgt-aaaaaatggttgttcaaatatcattt 14923086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 34270415 - 34270342
Alignment:
Q  13 cagagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||| |||||| || || |||| | |||||||||||||| |||||| || |||| ||||||||||||||||    
T  34270415 cagagagataaagtaaaa-aataatgggagtatgagagagaaaattgtcacaaagtggatgttcaaatatcattt 34270342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 42446274 - 42446320
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgt 60  Q
    ||||||| |||||||||| |||||||| ||| |||||||||||||||    
T  42446274 agagagaaaaagtagaaggacaatgtgagtaagagagagaaagttgt 42446320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 4434537 - 4434485
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||| ||| |||||||||  ||||||| ||||||||||||    
T  4434537 aatgtgagtatgagagaaaaaattgtcaaaaaatggttgtacaaatatcattt 4434485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 8725427 - 8725479
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||| | || |||||||| ||||||| ||||    
T  8725427 aatgtgagtatgagagagaaagttgtaataaagtggttgtacaaatataattt 8725479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 9226368 - 9226316
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||||  |  ||| ||||||||||||||||    
T  9226368 aatgtgagtatgagagagaaagttgtcattaaatggatgttcaaatatcattt 9226316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 11954519 - 11954471
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||| ||||| || || ||||||||| |||||||||||||||||||||    
T  11954519 agagaaagaaaataaaataacaatgtgagtatgagagagaaagttgtca 11954471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 22098343 - 22098295
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  22098343 agagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtca 22098295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 36739035 - 36738987
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  36739035 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtca 36738987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 5e-27; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 4857998 - 4857925
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||    
T  4857998 agagagagaaagtagaagaacaatgtgtgcatgagagagaaagttgtcaaaaagtgattgttcaaatatcattt 4857925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 40439823 - 40439871
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40439823 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 40439871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 5477149 - 5477225
Alignment:
Q  16 agagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    ||||||| | || ||||| |||||| ||||||||||||||||||||| || |||||||| |||||||||||||||||    
T  5477149 agagagagaataaaagaataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttatcat 5477225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 27742703 - 27742657
Alignment:
Q  16 agagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  27742703 agagagaatgtagaagaacaatgtgtgtatgagagagaaagttgtca 27742657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 4213160 - 4213112
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  4213160 agagagagaaggtagaagaacaatgtgagtatgagagagaaagttgtca 4213112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 17082726 - 17082774
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  17082726 agagagagaaaatagaagaataatgtgtgtatgagagagaaagttgtca 17082774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 45272165 - 45272217
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  45272165 aatgtgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcattt 45272217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 14983860 - 14983787
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| ||  | ||||||  |||||||||||||||||| |||| |||||||| ||||||||||||    
T  14983860 agagagagaaagtaaaaacataatgtgaatatgagagagaaagttgttaaaaagtggttgtacaaatatcattt 14983787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 33358143 - 33358215
Alignment:
Q  15 gagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||| || || |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  33358143 gagagataaagtaaaaaaataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 33358215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 38878892 - 38878932
Alignment:
Q  22 aaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  38878892 aaagtagaagaacaatgtgtatatgagagagaaagttgtca 38878932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 49241509 - 49241561
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| || |||| ||||||||||||||||    
T  49241509 aatgtgagtatgagagagaaagttgtcacaaagtggatgttcaaatatcattt 49241561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 49453546 - 49453494
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| || |||||||| ||||||||||||    
T  49453546 aatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 49453494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 51571462 - 51571418
Alignment:
Q  43 tatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  51571462 tatgagagagaaagttgtcaaaaagtggttgtacaaatatcattt 51571418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 40139181 - 40139124
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    |||||| ||||||||||||||||||||| ||  ||||||| |||||||||||| ||||    
T  40139181 aatgtgagtatgagagagaaagttgtcataaaatggttgtacaaatatcatttctcat 40139124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 41507199 - 41507256
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    |||||| ||||||||||||||||||||| ||  ||||||| |||||||||||| ||||    
T  41507199 aatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctcat 41507256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 48220128 - 48220200
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||| |||||| || || |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  48220128 agagagataaagtaaaa-aataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 48220200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 48872033 - 48872090
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    |||||| || |||||||||||||||||||||  ||||||| |||||||||||| ||||    
T  48872033 aatgtgggtgtgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctcat 48872090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 5975603 - 5975551
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||||||| |||| ||| || |||||||||    
T  5975603 aatgtgagtatgagagagaaagttgtcaaaaagtggatgtacatatatcattt 5975551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 6143743 - 6143691
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcattt 94  Q
    ||||||||||||||||||||| || |||| |||||||| ||||||| ||||||    
T  6143743 gtatgagagagaaagttgtcacaaagtggatgttcaaacatcatttctcattt 6143691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 7919045 - 7919093
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||| |||||||||| ||||| || |||||||||||||||||||||    
T  7919045 agagagataaagtagaaggacaatatgagtatgagagagaaagttgtca 7919093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 8200142 - 8200090
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  8200142 aatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 8200090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 18336213 - 18336153
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcatttc 95  Q
    |||||| ||||||||||||||||||||| ||  ||  |||||||||||||||| |||||||    
T  18336213 aatgtgagtatgagagagaaagttgtcacaaaatgaatgttcaaatatcatttctcatttc 18336153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 19969566 - 19969618
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  19969566 aatgtgagtatgagagagaaagttgtcataaaatggatgttcaaatatcattt 19969618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 40596059 - 40596111
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||||||| ||||||||||||    
T  40596059 aatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcattt 40596111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 43612085 - 43612137
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||| |||||||||||||||||||||| ||  ||||||| ||||||||||||    
T  43612085 aatgtatgtatgagagagaaagttgtcataaaatggttgtacaaatatcattt 43612137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 50781574 - 50781626
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  50781574 aatgtgagtatgagagagaaagttgtcataaaatggatgttcaaatatcattt 50781626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 33100895 - 33100844
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaa 65  Q
    |||||||||||||| ||  | |||||| ||||||||||||||||||||||||    
T  33100895 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcaaaa 33100844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 45065907 - 45065958
Alignment:
Q  36 atgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  45065907 atgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 45065958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 51718610 - 51718689
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgt-caaaaggtggttgttcaaatatcatttatcat 92  Q
    |||||||||| ||| ||  | |||||| |||||||||||||||||||  ||||  |||||||||||||||||||| ||||    
T  51718610 agagagagaaggtaaaaagataatgtgagtatgagagagaaagttgtgaaaaaaatggttgttcaaatatcatttctcat 51718689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 48858860 - 48858826
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||| |||||||||||||||||||||    
T  48858860 aaagttgtcaaaaagtggttgttcaaatatcattt 48858826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 29264063 - 29264018
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||| |||||||||||| || |||||||| ||||||||||||    
T  29264063 gtatgagaaagaaagttgtcataaagtggttgtacaaatatcattt 29264018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 36494523 - 36494474
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatca 91  Q
    |||||||||||||||||||||  |  ||| ||||||||||||||||||||    
T  36494523 gtatgagagagaaagttgtcactaaatggatgttcaaatatcatttatca 36494474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 37690489 - 37690432
Alignment:
Q  30 agaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||| |||||| |||||||||||||| |||||| || ||| |||| ||||||||||||    
T  37690489 agaataatgtgagtatgagagagaaaattgtcataaagtgattgtacaaatatcattt 37690432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 44632615 - 44632543
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||| |||||| || || |||||| |||||||||||||||||||||  |  ||| ||||||||||||||||    
T  44632615 agagagataaagtaaaa-aataatgtgagtatgagagagaaagttgtcaccaaatggatgttcaaatatcattt 44632543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 649856 - 649808
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  649856 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtca 649808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 5771731 - 5771779
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  5771731 agagagagaaagtaaaatgataatgtgagtatgagagagaaagttgtca 5771779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 11121547 - 11121495
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||  ||| || ||||| ||||||||||||    
T  11121547 aatgtgagtatgagagagaaagttgtacaaaagttgttgtacaaatatcattt 11121495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 27687524 - 27687576
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||| |||||||||| ||  ||||||| ||||||||||||    
T  27687524 aatgtgagtatgagagataaagttgtcacaaaatggttgtacaaatatcattt 27687576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 29294006 - 29293962
Alignment:
Q  43 tatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||||||||| || || ||||| ||||||||||||    
T  29294006 tatgagagagaaagttgtcataaagtagttgtacaaatatcattt 29293962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 30735277 - 30735325
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| || || |||||| |||||||||| ||||||||||    
T  30735277 agagagagaaagtaaaaaaataatgtgagtatgagagaaaaagttgtca 30735325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 35369787 - 35369739
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  |||||||| |||||||| ||||||||||||    
T  35369787 agagagagaaagtaaaaagacaatgtgagtatgagatagaaagttgtca 35369739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 47398456 - 47398508
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||| |||||||||  ||  ||||||||||||||||    
T  47398456 aatgtgagtatgagagagaaaattgtcaaaaaatgaatgttcaaatatcattt 47398508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 48983655 - 48983699
Alignment:
Q  18 agagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||||| ||  ||||| |||||||||||||||||||||    
T  48983655 agagaaagtagaataatcatgtgagtatgagagagaaagttgtca 48983699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 49660267 - 49660219
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| || || |||||| |||||||||| ||||||||||    
T  49660267 agagagagaaagtaaaaaaataatgtgagtatgagagataaagttgtca 49660219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 48494898 - 48494969
Alignment:
Q  16 agagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||    
T  48494898 agagagaatgtagaagaacaatgtgtgtatgagagataaagttgttaaaaagtggttgttcaaatatcattt 48494969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 5386460 - 5386387
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||||||||||  ||||||||||||||||||||    
T  5386460 agagagagaaagtaaaagaataatgtgagtatgagagagaaagttgtcaaaaaatggttgttcaaatatcattt 5386387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 42490996 - 42490923
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  42490996 agagagagaaagtaaaaacataatgtgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcattt 42490923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 29227226 - 29227270
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagtt 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29227226 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagtt 29227270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 2109519 - 2109446
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| ||  | |||||| |||||| |||||||||||||||||| ||||||| ||||||||||||    
T  2109519 agagagagaaagtaaaaacataatgtgagtatgaaagagaaagttgtcaaaagatggttgtacaaatatcattt 2109446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 36130336 - 36130384
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  36130336 agagagaaaaagtagaagaacaatgtgtgtatgagagataaagttgtca 36130384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 26600182 - 26600223
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaa 55  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  26600182 agagaaagaaagtagaagaacaatgtgtgtatgagagagaaa 26600223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 39158189 - 39158145
Alignment:
Q  18 agagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||| |||||| |||||||||||||||||||||    
T  39158189 agagaaagtagaagaataatgtgagtatgagagagaaagttgtca 39158145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 28657425 - 28657497
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||| |||||| || || |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  28657425 agagagataaagtaaaa-aataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 28657497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 46173610 - 46173553
Alignment:
Q  30 agaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||| |||||| ||| ||||||||||||||||| || |||||||| ||||||||||||    
T  46173610 agaataatgtgagtacgagagagaaagttgtcacaaagtggttgtacaaatatcattt 46173553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 19232117 - 19232185
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatat 82  Q
    |||||||||||||| ||  | |||||| ||||||||||||| ||||||||||  ||||||| |||||||    
T  19232117 agagagagaaagtaaaaatataatgtgagtatgagagagaaggttgtcaaaaattggttgtacaaatat 19232185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 31657713 - 31657661
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  31657713 aatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 31657661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 38519881 - 38519833
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||||||||| ||  ||||| |||||||||||||||||||||    
T  38519881 agagagagaaagtagaataatcatgtgagtatgagagagaaagttgtca 38519833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 39241306 - 39241358
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||||||| ||||||||||||    
T  39241306 aatgtgagtatgagagagaaagttgtcacaaattggttgtacaaatatcattt 39241358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 39606033 - 39605982
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||||||  |||||||||| |||||||||    
T  39606033 aatgtgagtatgagagagaaagttgtcaaaa-atggttgttcatatatcattt 39605982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 43769778 - 43769726
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  43769778 aatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 43769726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 48326607 - 48326555
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||| |||||||||| || |||||||| ||||||||||||    
T  48326607 aatgtgagtatgagagaaaaagttgtcacaaagtggttgtacaaatatcattt 48326555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 51255834 - 51255786
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||||||||| ||  ||||| |||||||||||||||||||||    
T  51255834 agagagagaaagtagaataatcatgtgagtatgagagagaaagttgtca 51255786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 44925164 - 44925203
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  44925164 aaagttgtcaaaaagtggttgttcaaatatcatttctcat 44925203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 5932798 - 5932832
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||| |||||||||||||||||||||    
T  5932798 aaagttgtcaaaaagtggttgttcaaatatcattt 5932832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 22072333 - 22072263
Alignment:
Q  17 gagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||| ||  |||||||| |||||||||| |||||||| | ||  || |||||||||||||||||    
T  22072333 gagagaaagtaaaaacacaatgtgagtatgagagaaaaagttgtaacaaaatgattgttcaaatatcattt 22072263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 24310526 - 24310584
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcatt 93  Q
    |||||| |||||||||||||||||||  |||  ||||||| |||||||||||| |||||    
T  24310526 aatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctcatt 24310584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 32012966 - 32012936
Alignment:
Q  32 aacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||    
T  32012966 aacaatgtgtgtatgagagagaaagttgtca 32012936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 4974166 - 4974109
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    |||||| ||||||||||||||||||| ||||  | ||||| |||||||||||| ||||    
T  4974166 aatgtgggtatgagagagaaagttgttaaaaaatagttgtacaaatatcatttctcat 4974109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 32365680 - 32365729
Alignment:
Q  43 tatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    |||||||||||||||||||| ||  ||||||| |||||||||||| ||||    
T  32365680 tatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctcat 32365729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 32621714 - 32621641
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||| |||| ||  | |||||| |||| |||||||||||||||| ||  ||||||| ||||||||||||    
T  32621714 agagagagagagtaaaaatagaatgtgagtattagagagaaagttgtcacaaaatggttgtgcaaatatcattt 32621641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 41119497 - 41119538
Alignment:
Q  46 gagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||| || |||||||| ||||||||||||    
T  41119497 gagagagaaagttgtcacaaagtggttgtacaaatatcattt 41119538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 52204938 - 52204897
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaa 55  Q
    ||||||||||||||||| ||||||||| |||||| |||||||    
T  52204938 agagagagaaagtagaaaaacaatgtgagtatgaaagagaaa 52204897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 149468 - 149516
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||||| |||  | |||||| |||||||||||||||||||||    
T  149468 agagagagaaagttgaaacataatgtgagtatgagagagaaagttgtca 149516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 4511880 - 4511828
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||||| | ||||||||||||    
T  4511880 aatgtgagtatgagagagaaagttgtcataaaatggttatacaaatatcattt 4511828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 5249956 - 5249908
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  5249956 agagagagaaagtaaaaacataatgtgagtatgagagagaaagttgtca 5249908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 10147089 - 10147133
Alignment:
Q  50 gagaaagttgtcaaaaggtggttgttcaaatatcatttatcattt 94  Q
    |||| |||||||||||  |||||||||||||||||||| ||||||    
T  10147089 gagagagttgtcaaaaaatggttgttcaaatatcatttctcattt 10147133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 10250499 - 10250547
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  10250499 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtca 10250547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 24509371 - 24509419
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| || || |||||| |||||||||| ||||||||||    
T  24509371 agagagagaaagtaaaaaaataatgtgagtatgagagataaagttgtca 24509419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 26718435 - 26718383
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||| |||||| ||  ||| ||||||||||||||||    
T  26718435 aatgtgagtatgagagagaaaattgtcataaaatggatgttcaaatatcattt 26718383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 26731063 - 26731011
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||| |||||| ||  ||| ||||||||||||||||    
T  26731063 aatgtgagtatgagagagaaaattgtcataaaatggatgttcaaatatcattt 26731011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 28676157 - 28676209
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||| |||||||||||||| ||  ||||||| ||||||||||||    
T  28676157 aatgtgagtatgaaagagaaagttgtcacaaaatggttgtacaaatatcattt 28676209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 30778269 - 30778321
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||| ||| ||||||||||||    
T  30778269 aatgtgagtatgagagagaaagttgtcacaaattggctgtacaaatatcattt 30778321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 30973652 - 30973600
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||| ||| |||||||||| || |||||||| ||||||||||||    
T  30973652 aatgtgagtatgaaagaaaaagttgtcataaagtggttgtacaaatatcattt 30973600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 43175071 - 43175027
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagtt 58  Q
    |||||||||||||| || || |||||| |||||||||||||||||    
T  43175071 agagagagaaagtaaaaaaataatgtgagtatgagagagaaagtt 43175027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 44257713 - 44257761
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  44257713 agagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtca 44257761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 51930914 - 51930846
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatat 82  Q
    |||||||||||||| ||  | |||||| |||||||||||||  |||||||||  ||||||| |||||||    
T  51930914 agagagagaaagtaaaaatataatgtgagtatgagagagaattttgtcaaaaattggttgtacaaatat 51930846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 33712409 - 33712360
Alignment:
Q  13 cagagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33712409 cagagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 33712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 18065073 - 18065121
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18065073 agagagagaaagtagaagaacaatgtgtgtatgagagaaaaagttgtca 18065121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 31517185 - 31517237
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||| ||||||||||||| |||||||| ||||||||||||    
T  31517185 aatgtgagtatgagagaaaaagttgtcaaaaagtggttgtacaaatatcattt 31517237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 32644678 - 32644619
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcattt 94  Q
    |||||| ||||||||||||||||||||||||  | ||||| |||||||||||| ||||||    
T  32644678 aatgtgagtatgagagagaaagttgtcaaaaaatagttgtacaaatatcatttctcattt 32644619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 12588365 - 12588438
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||| |||||| ||||| ||||||  | ||||||||||| |||||||||  ||||||||||||||| ||||    
T  12588365 agagagaaaaagtaaaagaagaatgtgaatttgagagagaaaattgtcaaaaattggttgttcaaatattattt 12588438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 1196113 - 1196061
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||| ||||||||||||||||||| ||| |||| ||||||||||||    
T  1196113 aatgtgagtattagagagaaagttgtcaaaaagtgattgtacaaatatcattt 1196061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 8645396 - 8645348
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||| | |||||| |||||||||||||||||||||    
T  8645396 agagagagaaagtaaaaggataatgtgagtatgagagagaaagttgtca 8645348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 11635518 - 11635566
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||| ||||||| |||||||  ||||||||||||||||||||    
T  11635518 agagagagaaaatagaagagcaatgtgaatatgagagagaaagttgtca 11635566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 12441592 - 12441541
Alignment:
Q  36 atgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||| ||||||||||||||||||||| || || ||||| ||||||||||||    
T  12441592 atgtgagtatgagagagaaagttgtcacaaagtagttgtacaaatatcattt 12441541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 2241825 - 2241875
Alignment:
Q  37 tgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||| |||||||||| ||||||||||||| ||||||||  |||||||||||    
T  2241825 tgtgagtatgagagaaaaagttgtcaaaaagtggttgtataaatatcattt 2241875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 28748172 - 28748127
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  28748172 gtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 28748127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 32149548 - 32149503
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||||||| || |||||||| ||||||| ||||    
T  32149548 gtatgagagagaaagttgtcacaaagtggttgtacaaatattattt 32149503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 2060638 - 2060690
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||| |||||||||| ||  ||||| ||||||||||||||    
T  2060638 aatgtgagtatgagagaaaaagttgtcataaaatggttattcaaatatcattt 2060690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 5080551 - 5080599
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| || || |||||| |||||| ||||||||||||||    
T  5080551 agagagagaaagtaaaaaaataatgtgagtatgaaagagaaagttgtca 5080599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 10335638 - 10335590
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| || || |||||| |||||||||| ||||||||||    
T  10335638 agagagagaaagtaaaaaaataatgtgagtatgagagataaagttgtca 10335590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 13423056 - 13423008
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  13423056 agagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtca 13423008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 25811822 - 25811870
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  25811822 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtca 25811870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 28310 - 28358
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28310 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 28358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 1068694 - 1068646
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1068694 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 1068646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 33107849 - 33107898
Alignment:
Q  13 cagagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33107849 cagagagagaaagtagaagaacaatgtgtgtatgagggagaaagttgtca 33107898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 44090974 - 44090926
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44090974 agagagagaaagtagaagaacaatgtgtgtatgagagagaaaattgtca 44090926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 5740769 - 5740842
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| ||  | |||||| |||||||||| ||||||||||||| |||||||| ||||||||||||    
T  5740769 agagagagaaagtaaaaacataatgtgagtatgagagaaaaagttgtcaaaaagtggttgtacaaatatcattt 5740842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 39211129 - 39211056
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||| |||||| ||  | |||||| ||||||||||||||||||||||||  ||||||||||||||||||||    
T  39211129 agagagaaaaagtaaaaacaaaatgtgagtatgagagagaaagttgtcaaaaaatggttgttcaaatatcattt 39211056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 15716959 - 15717007
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  15716959 agagagagaaagtagaagaacaatgtatgtatgagagaaaaagttgtca 15717007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 34435720 - 34435768
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  34435720 agagagcgaaagtagaagaacaatgtgtgtatgagagagaaaattgtca 34435768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 9047084 - 9047132
Alignment:
Q  44 atgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    |||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  9047084 atgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctcat 9047132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 33451547 - 33451594
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  33451547 agagagagaaagtagaaga-caatgtgagtatgagagagaaagttgtca 33451594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 37392133 - 37392185
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||||||  ||||||| ||||||||||||    
T  37392133 aatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcattt 37392185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 30439490 - 30439562
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||| |||||| || || |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  30439490 agagagataaagtaaaa-aataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 30439562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 1796551 - 1796499
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||| |||||||||||| || |||||||| ||||||||||||    
T  1796551 aatgtgagtatgagaaagaaagttgtcacaaagtggttgtacaaatatcattt 1796499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 5502418 - 5502374
Alignment:
Q  43 tatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||||||||| || |||||||| ||||||||||||    
T  5502418 tatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 5502374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 32020450 - 32020522
Alignment:
Q  15 gagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||| ||  | |||| | ||||||||||||||||| ||||||  ||||||| ||||||||||||    
T  32020450 gagagagaaagtaaaaacataatgcgagtatgagagagaaagttatcaaaaaatggttgtacaaatatcattt 32020522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 38174238 - 38174298
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtc-aaaaggtggttgttcaaatatcatttatcattt 94  Q
    |||||| |||||||||||||||||||| ||||| | ||||| |||||||||||| ||||||    
T  38174238 aatgtgagtatgagagagaaagttgtctaaaagatagttgtacaaatatcatttctcattt 38174298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 42768127 - 42768179
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||| ||||||||| || ||||| ||||||||||||    
T  42768127 aatgtgagtatgagagagaaaattgtcaaaaagtagttgtacaaatatcattt 42768179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 44103831 - 44103779
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| || |||||||| ||||||| ||||    
T  44103831 aatgtgagtatgagagagaaagttgtcataaagtggttgtacaaatataattt 44103779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 14710898 - 14710953
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatc 90  Q
    |||||| ||||||||||||||||||||| ||  || |||| |||||||||||||||    
T  14710898 aatgtgagtatgagagagaaagttgtcacaaaatgattgtacaaatatcatttatc 14710953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 18538440 - 18538389
Alignment:
Q  36 atgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||| |||||||||| ||||||||||||| |||||||| ||| ||||||||    
T  18538440 atgtgagtatgagagataaagttgtcaaaaagtggttgtacaagtatcattt 18538389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 895975 - 895937
Alignment:
Q  49 agagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  895975 agagaaagttgtcaaaaagtggttgtacaaatatcattt 895937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 2730995 - 2731029
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||| |||||||||||||||||||||    
T  2730995 aaagttgtcaaaaagtggttgttcaaatatcattt 2731029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 28646760 - 28646682
Alignment:
Q  13 cagagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatca 91  Q
    |||||||| |||||| || ||  ||||| |||||||||||||||||||||  |  | | ||||||||||||||||||||    
T  28646760 cagagagataaagtaaaaaaattatgtgagtatgagagagaaagttgtcatcaaatagatgttcaaatatcatttatca 28646682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 28651344 - 28651266
Alignment:
Q  13 cagagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatca 91  Q
    |||||||| |||||| || ||  ||||| |||||||||||||||||||||  |  | | ||||||||||||||||||||    
T  28651344 cagagagataaagtaaaaaaattatgtgagtatgagagagaaagttgtcatcaaatagatgttcaaatatcatttatca 28651266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 33107901 - 33107935
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||| |||||||||||||||||||||    
T  33107901 aaagttgtcaaaaagtggttgttcaaatatcattt 33107935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 34435771 - 34435805
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||| |||||||||||||||||||||    
T  34435771 aaagttgtcaaaaagtggttgttcaaatatcattt 34435805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 42652681 - 42652639
Alignment:
Q  16 agagagaaagtagaagaacaatgtgtgtatgagagagaaagtt 58  Q
    |||||||| |||||||||||||||| |||| ||||||||||||    
T  42652681 agagagaatgtagaagaacaatgtgagtatcagagagaaagtt 42652639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 426167 - 426134
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggt 68  Q
    |||||| |||||||||||||||||||||||||||    
T  426167 aatgtgagtatgagagagaaagttgtcaaaaggt 426134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 1370290 - 1370347
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    |||||| ||||| ||||||||||||| | || |||||||| |||||||||||| ||||    
T  1370290 aatgtgagtatgtgagagaaagttgttacaaagtggttgtacaaatatcatttctcat 1370347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 5601021 - 5601062
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcatttatcattt 94  Q
    |||||||||||||  |||||||||||||||||||| ||||||    
T  5601021 aaagttgtcaaaaaatggttgttcaaatatcatttctcattt 5601062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 5639599 - 5639558
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcatttatcattt 94  Q
    |||||||||||||  |||||||||||||||||||| ||||||    
T  5639599 aaagttgtcaaaaaatggttgttcaaatatcatttctcattt 5639558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 9630211 - 9630138
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||| ||||| |||||| ||||| |  |||||| |||||||||||| ||||  || |||||||||||||||||    
T  9630211 agagaaagaaaatagaaggacaatataagtatgaaagagaaagttgttaaaaaatgattgttcaaatatcattt 9630138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 21418597 - 21418630
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggt 68  Q
    |||||| |||||||||||||||||||||||||||    
T  21418597 aatgtgagtatgagagagaaagttgtcaaaaggt 21418630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 157115 - 157067
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatc 90  Q
    ||||||||||||||||||||  ||  ||||||| |||||||||||||||    
T  157115 gtatgagagagaaagttgtcgcaaaatggttgtacaaatatcatttatc 157067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 324099 - 324151
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||| ||||||||||||||||| |||| ||| || |||||||||    
T  324099 aatgtgagtatgacagagaaagttgtcaaaaagtggatgtacatatatcattt 324151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 6968237 - 6968289
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||||  || | | ||||||||||||||||    
T  6968237 aatgtgagtatgagagagaaagttgtcaccagattgatgttcaaatatcattt 6968289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 7325781 - 7325729
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||| | || |||| ||| ||||||||||||    
T  7325781 aatgtgagtatgagagagaaagttgttataaagtggatgtacaaatatcattt 7325729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 11223864 - 11223892
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaa 63  Q
    |||||||||||||||||||||||||||||    
T  11223864 aatgtgtgtatgagagagaaagttgtcaa 11223892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 25830229 - 25830277
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  25830229 agagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtca 25830277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 35067248 - 35067200
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  35067248 agagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtca 35067200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 37524433 - 37524485
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||| ||||||||||||||| || ||| |||| ||||||||||||    
T  37524433 aatgtgagtatgtgagagaaagttgtcacaaagtgcttgtacaaatatcattt 37524485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 38675691 - 38675643
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  38675691 agagagagaaagtaaaaatataatgtgggtatgagagagaaagttgtca 38675643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 41541924 - 41541872
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||| |||||||||||||||| ||  ||| ||||||||||||||||    
T  41541924 aatgtgagtataagagagaaagttgtcacaaaatggatgttcaaatatcattt 41541872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 42658693 - 42658645
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatc 90  Q
    |||||||||||||||||||||||| || | ||| || ||||||||||||    
T  42658693 gtatgagagagaaagttgtcaaaaagtagatgtacatatatcatttatc 42658645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 43715962 - 43715914
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  43715962 agagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtca 43715914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 2008841 - 2008889
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2008841 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 2008889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 43081873 - 43081921
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43081873 agagagagaaagtagaagaacaatgtgtgtataagagagaaagttgtca 43081921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 2469760 - 2469706
Alignment:
Q  33 acaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||| ||||||||||||||||||||| || |||||||| ||||||||||||    
T  2469760 acaatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 2469706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 31785454 - 31785528
Alignment:
Q  14 agagagagaaagtagaaga-acaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| || | |||||||| ||||||||||||||||| ||| || |||||||| ||||||||||||    
T  31785454 agagagagaaagtaaaaaacacaatgtgagtatgagagagaaagttttcataaagtggttgtacaaatatcattt 31785528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 22330631 - 22330688
Alignment:
Q  30 agaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||| |||||| ||||||||||||||||||||| || |||||||| ||||||||||||    
T  22330631 agaataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 22330688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 33845131 - 33845082
Alignment:
Q  13 cagagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||||||    
T  33845131 cagagaaaaaaagtagaagaacaatgtgtgtatgaaagagaaagttgtca 33845082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 37351990 - 37352047
Alignment:
Q  30 agaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||| |||||| ||||||||||||||||||||| || |||||||| ||||||||||||    
T  37351990 agaataatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 37352047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 45420044 - 45420117
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| ||  | ||||||  |||||||||||||||||||||||  | ||||||||||||||||||    
T  45420044 agagagagaaagtaaaatgataatgtgaatatgagagagaaagttgtcaaaaaatagttgttcaaatatcattt 45420117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 32777691 - 32777738
Alignment:
Q  15 gagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  32777691 gagagagaaagtagaaggacagtgtgagtatgagagagaaagttgtca 32777738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 8459662 - 8459612
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||| ||||    
T  8459662 gtatgagagagaaagttgttaaaaagtggttgtacaaatatcatttctcat 8459612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 15325623 - 15325669
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  15325623 agagagagaaagtagaagaacaatatgtg--tgagagagaaagttgtca 15325669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 26749092 - 26749020
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||| |||||||| || || || ||| ||||||||||||||||||||||||  | ||||||||||||||||||    
T  26749092 agagaaagaaagtataaaaataaagtgagtatgagagagaaagttgtcaaaa-attgttgttcaaatatcattt 26749020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 43444683 - 43444638
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||||||| || |||||||| ||||||||||||    
T  43444683 gtatgagagagaaagttgtcataaagtggttgtacaaatatcattt 43444638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 43942724 - 43942652
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| ||  | |||||| ||||||||||||||||||| ||||  | ||||||||||||||||||    
T  43942724 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgt-aaaaaatagttgttcaaatatcattt 43942652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 7817704 - 7817652
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  7817704 aatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 7817652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 13152680 - 13152632
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||| | |||||| |||||||||||||||||||||    
T  13152680 agagagagaaagtaaaaggataatgtgagtatgagagagaaagttgtca 13152632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 17945155 - 17945107
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||||| |||||| |||||||||| ||||||||||    
T  17945155 agagagagaaagtaaaagaataatgtgagtatgagagataaagttgtca 17945107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 21839138 - 21839190
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||| ||||||||||||| ||||||||  |||||||||||    
T  21839138 aatgtgagtatgagagataaagttgtcaaaaagtggttgtataaatatcattt 21839190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 34978384 - 34978336
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||| | |||||| |||||||||||||||||||||    
T  34978384 agagagagaaagtaaaaggataatgtgagtatgagagagaaagttgtca 34978336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 41989728 - 41989798
Alignment:
Q  16 agagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||| ||  | |||||| ||||||||||||||||||| ||||  |||||||| |||||||||||    
T  41989728 agagagaaagtaaaaatataatgtgagtatgagagagaaagttgt-aaaaaatggttgttaaaatatcattt 41989798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 2008892 - 2008926
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||| |||||||||||||||||||||    
T  2008892 aaagttgtcaaaaagtggttgttcaaatatcattt 2008926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 25887647 - 25887597
Alignment:
Q  37 tgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||| ||||||||||||||||||||| || |||| ||| ||||||||||||    
T  25887647 tgtgagtatgagagagaaagttgtcacaaagtggatgtacaaatatcattt 25887597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 41985100 - 41985157
Alignment:
Q  30 agaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||| |||||| ||||||||||||||||||||| ||  || |||| ||||||||||||    
T  41985100 agaataatgtgagtatgagagagaaagttgtcacaaattgattgtacaaatatcattt 41985157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 46880990 - 46880949
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaa 55  Q
    ||||||||| |||||||||||||| || ||||||||||||||    
T  46880990 agagagagatagtagaagaacaatatgagtatgagagagaaa 46880949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 47078235 - 47078307
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||| |||||| || || |||||| ||||||||||||||||||||| ||  | | ||||||||||||||||    
T  47078235 agagagataaagtaaaa-aataatgtgagtatgagagagaaagttgtcataaaatagatgttcaaatatcattt 47078307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 47684249 - 47684177
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||| |||||||| ||||||||| ||  |||||||||| ||||||||| ||  || |||||||||||||||||    
T  47684249 agagaaagaaagtataagaacaatatgaatatgagagag-aagttgtcataaaatgcttgttcaaatatcattt 47684177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 3062397 - 3062345
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||| |||||||||||||||| ||  ||| ||||||||||||||||    
T  3062397 aatgtgagtataagagagaaagttgtcacaaaatggatgttcaaatatcattt 3062345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 3937126 - 3937178
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  | | ||||||||||||||||    
T  3937126 aatgtgagtatgagagagaaagttgtcacaaaatagatgttcaaatatcattt 3937178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 11352978 - 11353030
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  | | ||||||||||||||||    
T  11352978 aatgtgagtatgagagagaaagttgtcacaaaattgatgttcaaatatcattt 11353030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 12007169 - 12007217
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||  |  ||||| |||||||||||||||||||||    
T  12007169 agagagagaaagtagaatgatcatgtgagtatgagagagaaagttgtca 12007217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 27866542 - 27866602
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcatttc 95  Q
    |||||| |||||||||| ||||||||  |||  ||||||| |||||||||||| |||||||    
T  27866542 aatgtgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctcatttc 27866602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 30941473 - 30941425
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  30941473 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtca 30941425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 38547295 - 38547347
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||| |||||||||||||||  | ||||| ||||||||||||    
T  38547295 aatgtgagtatgagaaagaaagttgtcaaaaaatagttgtacaaatatcattt 38547347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 39875822 - 39875866
Alignment:
Q  43 tatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||||||| |||| ||||||||  |||||||||||    
T  39875822 tatgagagagaaagttgttaaaaagtggttgtataaatatcattt 39875866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 41254842 - 41254790
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||||||| ||| | || ||||||| ||||    
T  41254842 aatgtgagtatgagagagaaagttgtcaaaaagtgatcgtacaaatataattt 41254790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 43213374 - 43213322
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||| |||| | || |||||||| ||||||||||||    
T  43213374 aatgtgagtatgagagagaaaattgttagaaagtggttgtacaaatatcattt 43213322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 43807800 - 43807844
Alignment:
Q  18 agagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||| |||||||||||| |||||||||| ||| ||||||    
T  43807800 agagaaagtaaaagaacaatgtgagtatgagagaaaaaattgtca 43807844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 47448914 - 47448866
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||| |||||||| ||  |||||||| |||||||||||||||||||||    
T  47448914 agagaaagaaagtaaaaacacaatgtgagtatgagagagaaagttgtca 47448866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 19916743 - 19916695
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19916743 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 19916695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 37316798 - 37316846
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37316798 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 37316846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 11965881 - 11965833
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11965881 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagctgtca 11965833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 37731183 - 37731231
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  37731183 agagagcgaaagtagaagaacaatgtgtgtatgagagagaaaattgtca 37731231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 37003696 - 37003650
Alignment:
Q  16 agagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||    
T  37003696 agagagaatgtagaagaacaatgtgagtatgagagagaaagttgtca 37003650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 8847575 - 8847531
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagtt 58  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  8847575 agagagagaaagtagaagaataatgtgtgtatgagaaagaaagtt 8847531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 30831842 - 30831802
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaa 54  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  30831842 agagagagaaagtagaagaacaatgtgagtatgagagagaa 30831802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 42081103 - 42081051
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||||||| |||| ||| ||||||||||||    
T  42081103 aatgtgagtatgagagagaaagttgtcaaaaagtggctgtacaaatatcattt 42081051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 32972912 - 32972966
Alignment:
Q  36 atgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatc 90  Q
    ||||| ||||||||||||||||||||| ||  ||| |||||||||||||||||||    
T  32972912 atgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttatc 32972966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 37737961 - 37738033
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||| |||| || |  |||||| |||||||||||||||||||| |||  ||||||||||||||||||||    
T  37737961 agagagagagagtaaaaaagtaatgtgagtatgagagagaaagttgtcgaaa-atggttgttcaaatatcattt 37738033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 8482245 - 8482289
Alignment:
Q  43 tatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||||||||| || |||||||| ||||||||||||    
T  8482245 tatgagagagaaagttgtcataaagtggttgtacaaatatcattt 8482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 9207677 - 9207629
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| || || |||||| |||||||||||||||||||||    
T  9207677 agagagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtca 9207629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 6646889 - 6646838
Alignment:
Q  36 atgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  6646889 atgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 6646838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 30996794 - 30996739
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatc 90  Q
    |||||| |||||||||||||||||||||||| ||   ||| |||||||||||||||    
T  30996794 aatgtgagtatgagagagaaagttgtcaaaaagtaaatgtacaaatatcatttatc 30996739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 10216911 - 10216861
Alignment:
Q  43 tatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcatt 93  Q
    ||||||||||||| ||||||||| ||| |||| |||||||||||| |||||    
T  10216911 tatgagagagaaaattgtcaaaaagtgattgtacaaatatcatttctcatt 10216861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 18510763 - 18510717
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgt 60  Q
    |||||||||||||||||| |||||||| ||| ||||| |||||||||    
T  18510763 agagagagaaagtagaaggacaatgtgagtaagagagggaaagttgt 18510717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 37731234 - 37731268
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||| |||||||||||||||||||||    
T  37731234 aaagttgtcaaaaagtggttgttcaaatatcattt 37731268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 42372567 - 42372493
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattta 88  Q
    ||||||| |||||| || || |||||| |||||||||||||||||||||  |  | | |||||||||||||||||    
T  42372567 agagagataaagtaaaaaaataatgtgagtatgagagagaaagttgtcactaaatagatgttcaaatatcattta 42372493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 3012857 - 3012902
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  3012857 gtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 3012902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7485531 - 7485462
Alignment:
Q  18 agagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||| ||  |||||||  |||| ||| ||| |||||||| || |||||||||||||||||||||    
T  7485531 agagaaagtaaaattacaatgtaagtataagaaagacagttgtcacaaagtggttgttcaaatatcattt 7485462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 9647219 - 9647147
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| ||  | ||| || ||||||||||||||||||| ||||  | ||||||||||||||||||    
T  9647219 agagagagaaagtaaaaagataatatgagtatgagagagaaagttgt-aaaaaatagttgttcaaatatcattt 9647147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 25801818 - 25801875
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcat 92  Q
    |||||| |||||||||| |||||||||| ||  ||||||| |||||||||||| ||||    
T  25801818 aatgtgagtatgagagataaagttgtcacaaattggttgtacaaatatcatttctcat 25801875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 28014015 - 28013970
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||||||||||  ||||||| ||||||| ||||    
T  28014015 gtatgagagagaaagttgtcaaaaattggttgtacaaatataattt 28013970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 42678836 - 42678764
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||| |||||| || || |||||| |||||||||||||||||||||  |  ||| ||||||||||||||||    
T  42678836 agagagataaagtaaaa-aataatgtgagtatgagagagaaagttgtcactaaatggatgttcaaatatcattt 42678764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 44423026 - 44422981
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||| |||| |||||||| ||||||||||||    
T  44423026 gtatgaaagagaaagttgttaaaaagtggttgtacaaatatcattt 44422981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 8427640 - 8427592
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||| | |||||  |||||||||||||||||||||    
T  8427640 agagagagaaagtaaaagtataatgtaagtatgagagagaaagttgtca 8427592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 9760105 - 9760057
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  9760105 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtca 9760057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 14877045 - 14876997
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||| ||||||  || |||| |||||||||||||||||||||    
T  14877045 agagagagaaaatagaagggcagtgtgagtatgagagagaaagttgtca 14876997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 18254193 - 18254241
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  18254193 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtca 18254241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 19695708 - 19695748
Alignment:
Q  47 agagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||||| ||| |||| ||||||||||||    
T  19695708 agagagaaagttgtcaaaaagtgattgtacaaatatcattt 19695748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 23352909 - 23352961
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| ||  ||| ||||||| ||||||||    
T  23352909 aatgtgagtatgagagagaaagttgtcacaaaatggctgttcaagtatcattt 23352961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 27695975 - 27696014
Alignment:
Q  47 agagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  27695975 agagagaaagttgtcaaaaa-tggttgttcaaatatcattt 27696014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 29449299 - 29449251
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  29449299 agagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtca 29449251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 29795502 - 29795450
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||| ||||||||||||||| ||  ||||||| ||||||||||||    
T  29795502 aatgtgagtatgtgagagaaagttgtcacaaaatggttgtacaaatatcattt 29795450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 38600880 - 38600828
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||||||  ||| ||| || |||||||||    
T  38600880 aatgtgagtatgagagagaaagttgtcaaaaaatggatgtacatatatcattt 38600828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 43725271 - 43725219
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||| || || | ||| ||||||||||||    
T  43725271 aatgtgagtatgagagagaaagttgtcataaagtagatgtacaaatatcattt 43725219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 45202145 - 45202189
Alignment:
Q  43 tatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||||||| ||||  ||||||| ||||||||||||    
T  45202145 tatgagagagaaagttgtaaaaaaatggttgtacaaatatcattt 45202189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 8936 - 8984
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8936 agagagagaaagtagaagaacaatgtgtgtatgagagagaaaattgtca 8984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 28700548 - 28700475
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| ||  | |||||| |||||||||| |||||||||||||  ||||||||||||||||||||    
T  28700548 agagagagaaagtaaaaacataatgtgagtatgagagataaagttgtcaaaaaatggttgttcaaatatcattt 28700475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 32363019 - 32362973
Alignment:
Q  16 agagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  32363019 agagagaaagtaaaagaacaatgtgtgtatgagagataaagttgtca 32362973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 9719436 - 9719516
Alignment:
Q  14 agagagagaaagtagaaga-acaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatcattt 94  Q
    |||||||||||||| |||| | |||||| ||||||||| |||| ||||||||| |||||||| |||||||||||| ||||||    
T  9719436 agagagagaaagta-aagacataatgtgagtatgagagggaaaattgtcaaaaagtggttgtacaaatatcatttctcattt 9719516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 55361217 - 55361290
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||||||| || || |||||| |||| ||||||||||||||||| |  ||||||| ||||||||||||    
T  55361217 agagagagaaagtaaaaaaataatgtgagtataagagagaaagttgtcaagaaatggttgtacaaatatcattt 55361290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 34307528 - 34307572
Alignment:
Q  18 agagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  34307528 agagaaagtagaagaacaatgtgagtatgaaagagaaagttgtca 34307572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 47683858 - 47683804
Alignment:
Q  33 acaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||| ||||||||||||||||||||| ||  ||||||| ||||||||||||    
T  47683858 acaatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcattt 47683804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 49761394 - 49761322
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||| |||||| || || |||||| ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  49761394 agagagataaagtaaaa-aataatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 49761322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 288813 - 288765
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| || || |||||| |||||||||||||||||||||    
T  288813 agagagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtca 288765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 5244316 - 5244268
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| || || |||||| |||||||||||||||||||||    
T  5244316 agagagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtca 5244268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 27168665 - 27168713
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||| ||||||||||| ||| || |||||||||||||||||||||    
T  27168665 agagagaggaagtagaagaataatatgagtatgagagagaaagttgtca 27168713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 35554120 - 35554172
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||||||| ||| || | ||||||||||||    
T  35554120 aatgtgagtatgagagagaaagttgtcaaaaagtgattatacaaatatcattt 35554172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 35597249 - 35597201
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| || || |||||| |||||||||||||||||||||    
T  35597249 agagagagaaagtaaaaaaataatgtgagtatgagagagaaagttgtca 35597201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 46953004 - 46952952
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||| ||||||  ||||||| ||||||||||||    
T  46953004 aatgtgagtatgagagagaaagttatcaaaaaatggttgtacaaatatcattt 46952952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 48490518 - 48490570
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||  ||| |||||||| ||||||||||||    
T  48490518 aatgtgagtatgagagagaaagttgtacaaaagtggttgtacaaatatcattt 48490570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 25188448 - 25188494
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgt 60  Q
    |||||||||||||| ||| |||||||| ||| |||||||||||||||    
T  25188448 agagagagaaagtataaggacaatgtgagtaagagagagaaagttgt 25188494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 35377065 - 35377139
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca-aaaggtggttgttcaaatatcattt 87  Q
    ||||| |||||||| ||  | |||||| || |||||||||||||||||| ||| || ||||||||||||||||||    
T  35377065 agagaaagaaagtaaaaacataatgtgagtgtgagagagaaagttgtcacaaaagttgttgttcaaatatcattt 35377139  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 14207441 - 14207408
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggt 68  Q
    |||||| |||||||||||||||||||||||||||    
T  14207441 aatgtgagtatgagagagaaagttgtcaaaaggt 14207408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 14215189 - 14215156
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggt 68  Q
    |||||| |||||||||||||||||||||||||||    
T  14215189 aatgtgagtatgagagagaaagttgtcaaaaggt 14215156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 38910622 - 38910663
Alignment:
Q  53 aaagttgtcaaaaggtggttgttcaaatatcatttatcattt 94  Q
    ||||||||  ||||||| ||||||||||||||||||||||||    
T  38910622 aaagttgtttaaaggtgtttgttcaaatatcatttatcattt 38910663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 41443174 - 41443215
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaa 55  Q
    |||||||||||||| ||||| |||||| ||||||||||||||    
T  41443174 agagagagaaagtaaaagaataatgtgagtatgagagagaaa 41443215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 43169753 - 43169810
Alignment:
Q  30 agaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||| |||||| |||||||||| |||||||||| ||  ||||||| ||||||||||||    
T  43169753 agaataatgtgagtatgagagaaaaagttgtcacaaaatggttgtacaaatatcattt 43169810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 53871016 - 53871089
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||||||| ||| ||  | ||||||  ||||||||||||| |||||| ||  ||||||||||||||||||||    
T  53871016 agagagagaaggtaaaaacaaaatgtgaatatgagagagaaaattgtcataaaatggttgttcaaatatcattt 53871089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 10811223 - 10811175
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||| ||| ||  |||||||| |||||||||||||||||||||    
T  10811223 agagagagaaggtaaaaacacaatgtgagtatgagagagaaagttgtca 10811175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 23585200 - 23585131
Alignment:
Q  16 agagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||| ||  |||| |||||| ||||||||||||||||||||| || ||  |||| ||||||||||||    
T  23585200 agagagaaaataagagaataatgtgagtatgagagagaaagttgtcacaaagt--ttgtacaaatatcattt 23585131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 23600023 - 23599954
Alignment:
Q  16 agagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||| ||  |||| |||||| ||||||||||||||||||||| || ||  |||| ||||||||||||    
T  23600023 agagagaaaataagagaataatgtgagtatgagagagaaagttgtcacaaagt--ttgtacaaatatcattt 23599954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 24645423 - 24645371
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||| |||||||||| ||  ||| ||||||||||||||||    
T  24645423 aatgtgagtatgagagaaaaagttgtcataaaatggatgttcaaatatcattt 24645371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 26014899 - 26014851
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  26014899 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtca 26014851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 29057714 - 29057662
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||  |||  ||||||| ||||||||||||    
T  29057714 aatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcattt 29057662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 29846896 - 29846948
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||||||||||||||||  |||  ||||||| ||||||||||||    
T  29846896 aatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcattt 29846948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 31997868 - 31997816
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| |||||| | |||||||||||| || |||||||| ||||||||||||    
T  31997868 aatgtgagtatgaaaaagaaagttgtcacaaagtggttgtacaaatatcattt 31997816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 32687973 - 32688017
Alignment:
Q  43 tatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||| ||||| || ||||||||||||||| ||||||||||||    
T  32687973 tatgagaaagaaaattatcaaaaggtggttgtacaaatatcattt 32688017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 38926715 - 38926667
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  38926715 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtca 38926667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 41505578 - 41505530
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  | |||||| |||||||||||||||||||||    
T  41505578 agagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtca 41505530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 49167838 - 49167790
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||| |||||| ||  | ||||||||||||||||||||||||||||    
T  49167838 agagagataaagtaaaaatataatgtgtgtatgagagagaaagttgtca 49167790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 52254122 - 52254170
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| ||  |||||| | |||||||||||||||||||||    
T  52254122 agagagagaaagtaaaaagacaatgcgagtatgagagagaaagttgtca 52254170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 55322700 - 55322776
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttatc 90  Q
    |||||||||||||| ||  | |||||| ||||| ||||||||||||||| ||  || | || |||||||||||||||    
T  55322700 agagagagaaagtaaaaacataatgtgagtatgggagagaaagttgtcacaaaatgctcgtacaaatatcatttatc 55322776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 6503 - 6551
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  6503 agagagagaaagtagaagaacaatgtgagtatgagagataaagttgtca 6551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 8556 - 8512
Alignment:
Q  18 agagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    |||||||||||||| |||||||| |||||||||||||||||||||    
T  8556 agagaaagtagaaggacaatgtgagtatgagagagaaagttgtca 8512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 31605 - 31657
Alignment:
Q  35 aatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    |||||| ||||||||||||||||||||||||  ||||||| ||||||||||||    
T  31605 aatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcattt 31657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 101889 - 101937
Alignment:
Q  14 agagagagaaagtagaagaacaatgtgtgtatgagagagaaagttgtca 62  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  101889 agagagagaaaatagaaggacaatgtgagtatgagagagaaagttgtca 101937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 29774 - 29829
Alignment:
Q  32 aacaatgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||| | |||||| ||||||||||||||| ||||||||  |||||||||||    
T  29774 aacaatgtgagcatgagaaagaaagttgtcaaaaagtggttgtataaatatcattt 29829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 3277 - 3328
Alignment:
Q  36 atgtgtgtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||| ||||||||||||||||||| | || |||||||| ||||||||||||    
T  3277 atgtgagtatgagagagaaagttgtgagaaagtggttgtacaaatatcattt 3328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 71600 - 71647
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcatttat 89  Q
    |||||||||| ||||||||  |||||||||||| ||||||||||||||    
T  71600 gtatgagagataaagttgttcaaaggtggttgtacaaatatcatttat 71647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 44834 - 44789
Alignment:
Q  42 gtatgagagagaaagttgtcaaaaggtggttgttcaaatatcattt 87  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||    
T  44834 gtatgagagagaaagttgtcacaaaatggatgttcaaatatcattt 44789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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