View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_1 (Length: 646)
Name: NF16573_low_1
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 628; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 3202116 - 3202747
Alignment:
| Q |
1 |
acttgaggggaaagtggatttccaataacagttcctttgaataaaattgtggccattggtgttgaagttgagtttatataatctttgatggataaaccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202116 |
acttgaggggaaagtggatttccaataacagttcctttgaataaaattgtggccattggtgttgaagttgagtttatataatctttgatggataaaccag |
3202215 |
T |
|
| Q |
101 |
cagagtaacttacatgcacagcaggtagaacatgaacatcagcaattggattgaaagcttcatcttcaccattcaaaagtatcatagcagcaccaccagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202216 |
cagagtaacttacatgcacagcaggtagaacatgaacatcagcaattggattgaaagcttcatcttcaccattcaaaagtatcatagcagcaccaccagc |
3202315 |
T |
|
| Q |
201 |
atctttaactgcttgacctttggctactctttcaaccgatccatcttgctcacacactactacctttcccttaacatcaacattctccatggaaaaagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202316 |
atctttaactgcttgacctttggctactctttcaaccgatccatcttgctcacacactactacctttcccttaacatcaacattctccatggaaaaagga |
3202415 |
T |
|
| Q |
301 |
ttacaaaaggcaatgaaatcatcacttgtgttaattgcacctgcatacacaagtggcaataatgctgatgcaaagtcttttggttggaaaactgattctc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3202416 |
ttacaaaaggcaatgaaatcatcacttgtgttaattgcacctgcatacacaagtggcaataatgttgatgcaaagtcttttggttggaaaactgattctc |
3202515 |
T |
|
| Q |
401 |
cgagatattccgtcccatccccaagcttagctactgcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttcattagccaa |
500 |
Q |
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| T |
3202516 |
cgagatattccgtcccatccccaagcttagctactgcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttcattagccaa |
3202615 |
T |
|
| Q |
501 |
tgtaccatgaaaaggacctgaatttccagcagaacaactaacaaaaattcccttttgaattgcactaaatgcaccaagtgcaattccactttcaaagaaa |
600 |
Q |
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| T |
3202616 |
tgtaccatgaaaaggacctgaatttccagcagaacaactaacaaaaattcccttttgaattgcactaaatgcaccaagtgcaattccactttcaaagaaa |
3202715 |
T |
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| Q |
601 |
gaagtagagggttgtccaagggagagagaaag |
632 |
Q |
| |
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| T |
3202716 |
gaagtagagggttgtccaagggagagagaaag |
3202747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 16 - 633
Target Start/End: Original strand, 3208105 - 3208722
Alignment:
| Q |
16 |
ggatttccaataacagttcctttgaataaaattgtggccattggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacat |
115 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
3208105 |
ggatttccaatgacagttcctttgaataaaattgtggccattggtgtggaagttgaatttatataatcttggatgtttaaaccagcagagtaacttacat |
3208204 |
T |
|
| Q |
116 |
gcacagcaggtagaacatgaacatcagcaattggattgaaagcttcatcttcaccattcaaaagtatcatagcagcaccaccagcatctttaactgcttg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3208205 |
gcacagcaggtagaacatgaacatcagcaattggattgaaatcttcaccttcactgttcaaaagtatcatagcagcaccaccggcatctttaactgcttg |
3208304 |
T |
|
| Q |
216 |
acctttggctactctttcaaccgatccatcttgctcacacactactacctttcccttaacatcaacattctccatggaaaaaggattacaaaaggcaatg |
315 |
Q |
| |
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|||||||||||||||| |||| | ||| ||||||||||||| |||| ||||||||||||||||| |||| ||||| || |||| ||||||||||||| |
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| T |
3208305 |
acctttggctactcttccaacaaacccaccttgctcacacacaactatttttcccttaacatcaaccttcttcatggcaataggaccacaaaaggcaatg |
3208404 |
T |
|
| Q |
316 |
aaatcatcacttgtgttaattgcacctgcatacacaagtggcaataatgctgatgcaaagtcttttggttggaaaactgattctccgagatattccgtcc |
415 |
Q |
| |
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||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
3208405 |
gaatcatcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgattctccaagatattctgtcc |
3208504 |
T |
|
| Q |
416 |
catccccaagcttagctactgcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttcattagccaatgtaccatgaaaagg |
515 |
Q |
| |
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| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||| |
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| T |
3208505 |
cgtcgccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaagg |
3208604 |
T |
|
| Q |
516 |
acctgaatttccagcagaacaactaacaaaaattcccttttgaattgcactaaatgcaccaagtgcaattccactttcaaagaaagaagtagagggttgt |
615 |
Q |
| |
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|||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| | |
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| T |
3208605 |
acctgaatttgcagctgaacaactaacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaaaggagaggagggtcct |
3208704 |
T |
|
| Q |
616 |
ccaagggagagagaaagt |
633 |
Q |
| |
|
|| ||||||||||||||| |
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| T |
3208705 |
ccgagggagagagaaagt |
3208722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 601
Target Start/End: Original strand, 3216041 - 3216629
Alignment:
| Q |
16 |
ggatttccaataacagttcctttgaataaaattgtggccattggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacat |
115 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3216041 |
ggatttccaataacagttccattgaataaaatcgtggccattggtgttgaagttgagtttatataatctttgatggataaaccagcagagtaacttacaa |
3216140 |
T |
|
| Q |
116 |
gcacagcaggtaga---acatgaacatcagcaattggattgaaagcttcatcttcaccattcaaaagtatcatagcagcaccaccagcatctttaactgc |
212 |
Q |
| |
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| T |
3216141 |
gtgcagcaggtagattgtcttgaacatcggattttggatcaaaaccttgaagtttactattcatgaggatcatggcagatccaccagcgtctttaactgc |
3216240 |
T |
|
| Q |
213 |
ttgacctttggctactctttcaaccgatccatcttgctcacacactactacctttcccttaacatcaacattctccatggaaaaaggattacaaaaggca |
312 |
Q |
| |
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|||| |||| ||| || | ||| |||| ||| |||||||| |||||||||||||||||||||| |||| |||||||| |||| |||||||||| |
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| T |
3216241 |
ttgagctttcgctgcttgtgaaacaagtccaccttcctcacacaaaactacctttcccttaacatcaatgttcttcatggaaataggaccacaaaaggca |
3216340 |
T |
|
| Q |
313 |
atgaaatcatcacttgtgttaattgcacctgcatacacaagtggcaataatgctgatgcaaagtcttttggttggaaaactgattctccgagatattccg |
412 |
Q |
| |
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||| ||| ||||||| | |||| | ||||||||||||||||||||| | || ||||||||| ||||||||||| || ||||||||||| | ||||| |
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| T |
3216341 |
atggaattatcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttgaaacactgattctccaatatattttt |
3216440 |
T |
|
| Q |
413 |
tcccatccccaagcttagctactgcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttcattagccaatgtaccatgaaa |
512 |
Q |
| |
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||| | ||||| ||||||| ||| ||||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||| | |||||||| | |
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|
| T |
3216441 |
ccccgttgccaagtttagctattgcttctatttttctatcagttgtgctagcaccaacagttagaatccatggtgcttcattagacgttgtaccataatc |
3216540 |
T |
|
| Q |
513 |
aggacctgaatttccagcagaacaactaacaaaaattcccttttgaattgcactaaatgcaccaagtgcaattccactttcaaagaaag |
601 |
Q |
| |
|
|||||| |||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
3216541 |
aggaccaaaatttccagctgagcaactaacgaaaattcccttttgatttgcactaaatgcaccaagtgcaattacatcttcaaagaaag |
3216629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 494
Target Start/End: Original strand, 3226375 - 3226427
Alignment:
| Q |
442 |
atttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttcatt |
494 |
Q |
| |
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|||||||||||||||||||| ||||||||||| | ||||| || |||||||| |
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|
| T |
3226375 |
atttttctgtcaattgtgctagcaccaacagtgaggatccaaggagcttcatt |
3226427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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