View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16573_low_10 (Length: 467)
Name: NF16573_low_10
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 34118885 - 34119227
Alignment:
| Q |
1 |
aaaacaagagccaatcatccactatttaaccacttagctaagtagagaggatattgtcagacacaattttttgtcactgtccatattccctcaaagtatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34118885 |
aaaacaagagccaatcatccactatttaaccacttagctaagtagagaggatattgtcagacacagttttttgtcactgtccatattccctcaaagtatc |
34118984 |
T |
|
| Q |
101 |
taaattgttggcctaccataacaccatttagtatttgcatttgcatgtataccaagtcaagtgtatatatcaccagtgtcatgtttatatcatttgatac |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34118985 |
tcaattgttggcctaccataacaccatttagtatttgcatttgcatgtataccaagtcaagtgtatatatcaccagtgtcatgtttatatcatttgatac |
34119084 |
T |
|
| Q |
201 |
tacatgtcacatgaaattggtcccacattttttgattgtaaatatttgatttgttcataggtgtataataaaataaagtaggctttgtttgaccttgtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34119085 |
tacatgtcacatgaaattggtcccacattttttgattgtaaatatttgatttgttcataggtgtataataaaataaagtaggctttgtttgaccttgtta |
34119184 |
T |
|
| Q |
301 |
attccactaattgatatggatatagcaactattgtccaaagga |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34119185 |
attccactaattgatatggatatagcaactattgtccaaagga |
34119227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 452
Target Start/End: Original strand, 34119297 - 34119336
Alignment:
| Q |
413 |
cgctgtgccttgctgatataaatttgtgaatattataggt |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34119297 |
cgctgtgccttgctgatataaatttgtgaatattataggt |
34119336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University