View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16573_low_12 (Length: 455)
Name: NF16573_low_12
Description: NF16573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16573_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 22763093 - 22762671
Alignment:
| Q |
17 |
caaaggcgcatcatataaaagtaaggatcgacgtctcgatcattatatatttatattcaaagcaattcctatatggtgtagtctactgtataagggatat |
116 |
Q |
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| T |
22763093 |
caaaggcgcatcatataaaagtaaggatcaacgtctcgatcaatatatatttatattcaaagcaattcctatatggtgtagtctactgtataagggatat |
22762994 |
T |
|
| Q |
117 |
cttagtacgcgtaatcagttgactatagtcgattaagttcttattgtagagaaggaaaaatcactgtattaagggtgaattggactagctatcgatagac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22762993 |
cttagtacgcgtaatcagttgactatagtcgattaagttcttattgtagagaaggcaaaatcactgtattaagggtggattggactagctatcgatagac |
22762894 |
T |
|
| Q |
217 |
agtaaaccagtataaatatattgtgtcattctttcgggacaagatcataacgaggttcgcttcccccattgggtttataagctcccctgatgtttatatt |
316 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22762893 |
agtgaaccagtataaatatattgtgtcattctttcaggacaagatcataacgagtttcgcttcccccattgggtttataagctcccccgatgtttatatt |
22762794 |
T |
|
| Q |
317 |
gattcctgaggtgtgggagaacaatttctgaagtttaaagaacaatttccatcattttatgtatgttgttgtttaaagaacaaaatctagtttagggtta |
416 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22762793 |
gattcctgaggcgtgggagaacaatttctaaagtttaaagaacaatttccatcattttatgtatgttattgtttaaagaacaaaatctagtttagggtta |
22762694 |
T |
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| Q |
417 |
ttctgaacattggtgtagtttgt |
439 |
Q |
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| T |
22762693 |
ttctgaacattggtgtagtttgt |
22762671 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 24593895 - 24593927
Alignment:
| Q |
334 |
agaacaatttctgaagtttaaagaacaatttcc |
366 |
Q |
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| T |
24593895 |
agaacaatttctaaagtttaaagaacaatttcc |
24593927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 37992227 - 37992183
Alignment:
| Q |
323 |
tgaggtgtgggagaacaatttctgaagtttaaagaacaatttcca |
367 |
Q |
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| T |
37992227 |
tgaggtgtgggagaacattttctgaagtgtaaagagtaatttcca |
37992183 |
T |
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